22,199 research outputs found

    Impact of template backbone heterogeneity on RNA polymerase II transcription.

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    Variations in the sugar component (ribose or deoxyribose) and the nature of the phosphodiester linkage (3'-5' or 2'-5' orientation) have been a challenge for genetic information transfer from the very beginning of evolution. RNA polymerase II (pol II) governs the transcription of DNA into precursor mRNA in all eukaryotic cells. How pol II recognizes DNA template backbone (phosphodiester linkage and sugar) and whether it tolerates the backbone heterogeneity remain elusive. Such knowledge is not only important for elucidating the chemical basis of transcriptional fidelity but also provides new insights into molecular evolution. In this study, we systematically and quantitatively investigated pol II transcriptional behaviors through different template backbone variants. We revealed that pol II can well tolerate and bypass sugar heterogeneity sites at the template but stalls at phosphodiester linkage heterogeneity sites. The distinct impacts of these two backbone components on pol II transcription reveal the molecular basis of template recognition during pol II transcription and provide the evolutionary insight from the RNA world to the contemporary 'imperfect' DNA world. In addition, our results also reveal the transcriptional consequences from ribose-containing genomic DNA

    Experimental Test of Irreducible Four-Qubit Greenberger-Horne-Zeilinger Paradox

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    Bell's theorem shows a profound contradiction between local realism and quantum mechanics on the level of statistical predictions. It does not involve directly Einstein-Podolsky-Rosen (EPR) correlations. The paradox of Greenberger-Horne-Zeilinger (GHZ) disproves directly the concept of EPR elements of reality, based on the EPR correlations, in an all-versus-nothing way. A three-qubit experimental demonstration of the GHZ paradox was achieved nearly twenty years ago, and followed by demonstrations for more qubits. Still, the GHZ contradictions underlying the tests can be reduced to three-qubit one. We show an irreducible four-qubit GHZ paradox, and report its experimental demonstration. The reducibility loophole is closed. The bound of a three-setting per party Bell-GHZ inequality is violated by 7σ7\sigma. The fidelity of the GHZ state was around 81%81\%, and an entanglement witness reveals a violation of the separability threshold by 19σ19\sigma.Comment: 6 pages, 4 figures, 1 tabl
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