14 research outputs found
Characteristics of Chinese Cities around Poyang Lake ―Nanchang, Jiujiang and Jingdezhen―
研究ノートdepartmental bulletin pape
SBML Level 3: an extensible format for the exchange and reuse of biological models
Abstract Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction‐based models and packages that extend the core with features suited to other model types including constraint‐based models, reaction‐diffusion models, logical network models, and rule‐based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models. More recently, the rise of multiscale models of whole cells and organs, and new data sources such as single‐cell measurements and live imaging, has precipitated new ways of integrating data with models. We provide our perspectives on the challenges presented by these developments and how SBML Level 3 provides the foundation needed to support this evolution
SBML Level 3: an extensible format for the exchange and reuse of biological models
Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction-based models and packages that extend the core with features suited to other model types including constraint-based models, reaction-diffusion models, logical network models, and rule-based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models. More recently, the rise of multiscale models of whole cells and organs, and new data sources such as single-cell measurements and live imaging, has precipitated new ways of integrating data with models. We provide our perspectives on the challenges presented by these developments and how SBML Level 3 provides the foundation needed to support this evolution.journal articl
The influence of the Great Meteor Seamount on the distribution of phytoplankton
No abstracts are to be cited without prior reference to the author.The influence of the Great Meteor Seamount on the distribution of phytoplankto
MOESM1 of A non-native macroalga is less attractive for herbivores but more susceptible to light limitation and grazing stress than a comparable native species
Additional file 1. The study consisted of three sequential stages: (i) assessing algal light compensation points, (ii) inducing light limitation and grazing and (iii) assessing grazer consumption rates in no-choice feeding assays after light limitation and grazer impact
