Hypolithic and soil microbial community assembly along an aridity gradient in the Namib Desert

The Namib Dessert is considered the oldest desert in the world and hyperarid for the last 5 million years. However, the environmental buffering provided by quartz and other translucent rocks supports extensive hypolithic microbial communities. In this study, open soil and hypolithic microbial communities have been investigated along an East–West transect characterized by an inverse fog-rainfall gradient. Multivariate analysis showed that structurally different microbial communities occur in soil and in hypolithic zones. Using variation partitioning, we found that hypolithic communities exhibited a fog-related distribution as indicated by the significant East– West clustering. Sodium content was also an important environmental factor affecting the composition of both soil and hypolithic microbial communities. Finally, although null models for patterns in microbial communities were not supported by experimental data, the amount of unexplained variation (68–97 %) suggests that stochastic processes also play a role in the assembly of such communities in the Namib Desert.Web of Scienc

The relevance of fungi in astrobiology research – Astromycology

Since the very first steps of space exploration, fungi have been recorded as contaminants, hitchhikers, or as part of missions’ crews and payloads. Because fungi can cause human disease and are highly active decomposers, their presence in a space-linked context has been a source of major concern given their possible detrimental effects on crews and space structures. However, fungi can also be beneficial and be used for many space applications. The exact effects on fungi are not always clear as they possess high adaptability and plasticity, and their phenotypes and genotypes can undergo several changes under the extreme conditions found in space, thus leading to different results than those we would have on Earth. Understanding and analysing these aspects is the subject of astromycology, a research field within astrobiology. The impending situation of a resurgent space race is expected to boost astromycology’s visibility and importance. However, researchers lack both a framework and a solid base of knowledge from which to contextualise their work. This critical review addresses this gap by conceptualising the field of astromycology, covering key research and current questions pertaining to the field, and providing a relevant research instrument for future work

Fundamental Science and Engineering Questions in Planetary Cave Exploration

32 páginas.- 3 figuras.- 2 tablas.- 260 referenciasNearly half a century ago, two papers postulated the likelihood of lunar lava tube caves using mathematical models. Today, armed with an array of orbiting and fly-by satellites and survey instrumentation, we have now acquired cave data across our solar system-including the identification of potential cave entrances on the Moon, Mars, and at least nine other planetary bodies. These discoveries gave rise to the study of planetary caves. To help advance this field, we leveraged the expertise of an interdisciplinary group to identify a strategy to explore caves beyond Earth. Focusing primarily on astrobiology, the cave environment, geology, robotics, instrumentation, and human exploration, our goal was to produce a framework to guide this subdiscipline through at least the next decade. To do this, we first assembled a list of 198 science and engineering questions. Then, through a series of social surveys, 114 scientists and engineers winnowed down the list to the top 53 highest priority questions. This exercise resulted in identifying emerging and crucial research areas that require robust development to ultimately support a robotic mission to a planetary cave-principally the Moon and/or Mars. With the necessary financial investment and institutional support, the research and technological development required to achieve these necessary advancements over the next decade are attainable. Subsequently, we will be positioned to robotically examine lunar caves and search for evidence of life within Martian caves; in turn, this will set the stage for human exploration and potential habitation of both the lunar and Martian subsurface.The following funding sources are recognized for supporting several of the contributing authors: Human Frontiers Science Program grant #RGY0066/2018 (for AAB), NASA Innovative Advanced Concepts Grant #80HQTR19C0034 (HJ, UYW, and WLW), and European Research Council, ERC Consolidator Grant #818602 (AGF), the Spanish Ministry of Science and Innovation (project PID2019-108672RJ-I00) and the "Ramon y Cajal" post-doctoral contract (grant #RYC2019-026885-I (AZM)), and Contract #80NM0018D0004 between the Jet Propulsion Laboratory, California Institute of Technology and the National Aeronautics and Space Administration (AA, MJM, KU, and LK).Peer reviewe

Author Correction: Unveiling metabolic pathways involved in the extreme desiccation tolerance of an Atacama cyanobacterium (Scientific Reports, (2023), 13, 1, (15767), 10.1038/s41598-023-41879-8)

Correction to: Scientific Reports, published online 22 September 2023 The Acknowledgements section in the original version of this Article was incomplete. “This work was supported by NASA Exobiology awards 80NSSC19K0469 (MIT) and 80NSSC22K0189 (Georgia Tech) to CEC, and the Human Frontiers Science Program grant RGY0066/2018 to AAB.” now reads: “This work was supported by NASA Exobiology awards 80NSSC19K0469 (MIT) and 80NSSC22K0189 (Georgia Tech) to CEC, and the Human Frontiers Science Program grant RGY0066/2018 and the European Research Council Grant no 818602 to AAB.” The original Article has been corrected. © 2023, Springer Nature Limited.National Aeronautics and Space Administration, NASA, (80NSSC19K0469, 80NSSC22K0189); European Research Council, ERC, (818602); Human Frontier Science Program, HFSP, (RGY0066/2018)Universidad Autónoma de Chil

Unveiling metabolic pathways involved in the extreme desiccation tolerance of an Atacama cyanobacterium

Abstract Gloeocapsopsis dulcis strain AAB1 is an extremely xerotolerant cyanobacterium isolated from the Atacama Desert (i.e., the driest and oldest desert on Earth) that holds astrobiological significance due to its ability to biosynthesize compatible solutes at ultra-low water activities. We sequenced and assembled the G. dulcis genome de novo using a combination of long- and short-read sequencing, which resulted in high-quality consensus sequences of the chromosome and two plasmids. We leveraged the G. dulcis genome to generate a genome-scale metabolic model (iGd895) to simulate growth in silico. iGd895 represents, to our knowledge, the first genome-scale metabolic reconstruction developed for an extremely xerotolerant cyanobacterium. The model's predictive capability was assessed by comparing the in silico growth rate with in vitro growth rates of G. dulcis, in addition to the synthesis of trehalose. iGd895 allowed us to explore simulations of key metabolic processes such as essential pathways for water-stress tolerance, and significant alterations to reaction flux distribution and metabolic network reorganization resulting from water limitation. Our study provides insights into the potential metabolic strategies employed by G. dulcis, emphasizing the crucial roles of compatible solutes, metabolic water, energy conservation, and the precise regulation of reaction rates in their adaptation to water stress

Aspergillus atacamensis and A. salisburgensis: two new halophilic species from hypersaline/arid habitats with a phialosimplex-like morphology

Halophilic fungal strains isolated from historical wooden staircase in a salt mine in Austria, and from wall biofilm and soil of a cave in the Coastal Range of the hyperarid Atacama Desert in Chile were characterised and described newly as Aspergillus salisburgensis and Aspergillus atacamensis. Morphological characters including solitary phialides producing solitary conidia and conidia in chains and/or heads suggested affinity to Aspergillus subgenus Polypaecilum. Strains required salt for growth, grew optimally on media with 10–25% NaCl and at 15–28 °C. These values are similar to those observed for Aspergillus salinarus comb. nov. (Phialosimplex salinarum), while the ex-type strains of Aspergillus sclerotialis, Aspergillus chlamydosporus and Aspergillus caninus (all belonging to Aspergillus subgen. Polypaecilum) grew optimally at 0–5% NaCl and showed fastest growth at 28–37 °C. Phylogenetic analyses on the basis of rDNA sequences, RAPD-PCR fingerprint patterns, and cellobiohydrolase gene (cbh-I) polymorphism clustered the strains into three groups and supported their taxonomic recognition as A. salinarus, A. atacamensis and A. salisburgensis. On the basis of phylogenetic inferences, also Sagenomella keratitidis is newly combined as Aspergillus keratitidis and inferred as a species of Aspergillus subgenus Polypaecilum. © 2017, Springer Japan.Universidad Autónoma de Chil

Draft genome sequence of the extremely desiccation-tolerant cyanobacterium Gloeocapsopsis sp. strain AAB1

Gloeocapsopsis sp. strain AAB1 is an extremely desiccation-tolerant cyanobacterium isolated from translucent quartz stones from the Atacama Desert (Chile). Here, we report its draft genome sequence, which consists of 137 contigs with an ~5.4-Mb genome size. The annotation revealed 5,641 coding DNA sequences, 38 tRNA genes, and 5 rRNA genes. © 2018 Puente-Sánchez et al.Universidad Autónoma de Chil

Hypolithic Cyanobacteria Supported Mainly by Fog in the Coastal Range of the Atacama Desert

The Atacama Desert is one of the driest places on Earth, with an arid core highly adverse to the development of hypolithic cyanobacteria. Previous work has shown that when rain levels fall below similar to 1 mm per year, colonization of suitable quartz stones falls to virtually zero. Here, we report that along the coast in these arid regions, complex associations of cyanobacteria, archaea, and heterotrophic bacteria inhabit the undersides of translucent quartz stones. Colonization rates in these areas, which receive virtually no rain but mainly fog, are significantly higher than those reported inland in the hyperarid zone at the same latitude. Here, hypolithic colonization rates can be up to 80%, with all quartz rocks over 20 g being colonized. This finding strongly suggests that hypolithic microbial communities thriving in the seaward face of the Coastal Range can survive with fog as the main regular source of moisture. A model is advanced where the development of the hypolithic communities under quartz stones relies on a positive feedback between fog availability and the higher thermal conductivity of the quartz rocks, which results in lower daytime temperatures at the quartz-soil interface microenvironment.Millennium Institute of Fundamental and Applied Biology, MIFAB (Chile

Planetary Protection and the astrobiological exploration of Mars: Proactive steps in moving forward

Future efforts towards Mars exploration should include a discussion about the effects that the strict application of Planetary Protection policies is having on the astrobiological exploration of Mars, which is resulting in a continued delay in the search for Martian life. As proactive steps in the path forward, here we propose advances in three areas. First, we suggest that a redefinition of Planetary Protection and Special Regions is required for the case of Mars. Particularly, we propose a definition for special places on Mars that we can get to in the next 10–20 years with rovers and landers, where try to address questions regarding whether there is present-day near-surface life on Mars or not, and crucially doing so before the arrival of manned missions. We propose to call those special places “Astrobiology Priority Exploration” regions (APEX regions). Second, we stress the need for the development of robotic tools for the characterization of complex organic compounds as unequivocal signs of life, and particularly new generations of complex organic chemistry and biosignature detection instruments, including advances in DNA sequencing. And third, we advocate for a change from the present generation of SUV-sized landers and rovers to new robotic assets that are much easier to decontaminate such as microlanders: they would be very small with limited sensing capabilities, but there would be many of them available for launch and coordination from an orbiting platform. Implementing these changes will help to move forward with an exploration approach that is much less risky to the potential Mars biosphere, while also being much more scientifically rigorous about the exploration of the “life on Mars” question – a question that needs to be answered both for astrobiological discovery and for learning more definitive lessons on Planetary Protection. © 2019 COSPARUniversidad Autónoma de Chil