Three-dimensional reconstruction of CME-driven shock-streamer interaction from radio and EUV observations: a different take on the diagnostics of coronal magnetic fields

On 2014 October 30, a band-splitted type II radio burst associated with a coronal mass ejection (CME) observed by the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamic Observatory (SDO) occurred over the southeast limb of the Sun. The fast expansion in all directions of the plasma front acted as a piston and drove a spherical fast shock ahead of it, whose outward progression was traced by simultaneous images obtained with the Nan\c{c}ay Radioheliograph (NRH). The geometry of the CME/shock event was recovered through 3D modeling, given the absence of concomitant stereoscopic observations, and assuming that the band-splitted type II burst was emitted at the intersection of the shock surface with two adjacent low-Alfven speed coronal streamers. From the derived spatiotemporal evolution of the standoff distance between shock and CME leading edge, we were finally able to infer the magnetic field strength $B$ in the inner corona. A simple radial profile of the form $B(r) = (12.6 \pm 2.5) r^{-4}$ nicely fits our results, together with previous estimates, in the range $r = 1.1-2.0$ solar radii.Comment: Accepted for publication in Astronomy & Astrophysics Letter

The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome

Analyzing genome structure in different species allows to gain an insight into the evolution of plant genome size. Olive (Olea europaea L.) has a medium-sized haploid genome of 1.4 Gb, whose structure is largely uncharacterized, despite the growing importance of this tree as oil crop. Next-generation sequencing technologies and different computational procedures have been used to study the composition of the olive genome and its repetitive fraction. A total of 2.03 and 2.3 genome equivalents of Illumina and 454 reads from genomic DNA, respectively, were assembled following different procedures, which produced more than 200,000 differently redundant contigs, with mean length higher than 1,000 nt. Mapping Illumina reads onto the assembled sequences was used to estimate their redundancy. The genome data set was subdivided into highly and medium redundant and nonredundant contigs. By combining identification and mapping of repeated sequences, it was established that tandem repeats represent a very large portion of the olive genome (∼31% of the whole genome), consisting of six main families of different length, two of which were first discovered in these experiments. The other large redundant class in the olive genome is represented by transposable elements (especially long terminal repeat-retrotransposons). On the whole, the results of our analyses show the peculiar landscape of the olive genome, related to the massive amplification of tandem repeats, more than that reported for any other sequenced plant genome

High Performance Compostable Biocomposites Based on Bacterial Polyesters Suitable For Injection Molding and Blow Extrusion

This work deals with the design, preparation and characterization of composites based on Poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyvalerate] and lignocellulosic filler suitable for the production of compostable and biodegradable biocomposites that mimic the thermo-mechanical and processing characteristics commonly found in those polymeric materials specially designed for injection molding and blow extrusion. The best formulation in terms of processability, thermo-mechanical properties and biodegradation behavior under mature compost conditions was the biocomposite that contained 42.8 % by wt. of Poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyvalerate] as the major component, 5 % by wt. of lignocellulosic filler, 10 % by wt. of tributyl citrate plasticizer, 30 % by wt. of Poly(butylene adipate-co-terephthalate), 10 % by wt. of Poly(vinyl acetate), 0.2 % by wt. of Joncryl ADR-4368C a chain extender, 1 % by wt. of a primary antioxidant mix, and 1 % by wt. of nucleating agents

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

Improved knowledge of genome composition, especially of its repetitive component, generates important information for both theoretical and applied research. The olive repetitive component is made up of two main classes of sequences: tandem repeats and retrotransposons (REs). In this study, we provide characterization of a sample of 254 unique full-length long terminal repeat (LTR) REs. In the sample, Ty1-Copia elements were more numerous than Ty3-Gypsy elements. Mapping a large set of Illumina whole-genome shotgun reads onto the identified retroelement set revealed that Gypsy elements are more redundant than Copia elements. The insertion time of intact retroelements was estimated based on sister LTR's divergence. Although some elements inserted relatively recently, the mean insertion age of the isolated retroelements is around 18 million yrs. Gypsy and Copia retroelements showed different waves of transposition, with Gypsy elements especially active between 10 and 25 million yrs ago and nearly inactive in the last 7 million yrs. The occurrence of numerous solo-LTRs related to isolated full-length retroelements was ascertained for two Gypsy elements and one Copia element. Overall, the results reported in this study show that RE activity (both retrotransposition and DNA loss) has impacted the olive genome structure in more ancient times than in other angiosperms

The Singular Evolution of Olea Genome Structure

The current view of plant genome evolution proposes that genome size has mainly been determined by polyploidisation and amplification/loss of transposons, with a minor role played by other repeated sequences, such as tandem repeats. In cultivated olive (Olea europaea subsp. europaea var. europaea), available data suggest a singular model of genome evolution, in which a massive expansion of tandem-repeated sequences accompanied changes in nuclear architecture. This peculiar scenario highlights the importance of focusing on Olea genus evolution, to shed light on mechanisms that led to its present genomic structure. Next-generation sequencing technologies, bioinformatics and in situ hybridisation were applied to study the genomic structure of five related Olea taxa, which originated at different times from their last common ancestor. On average, repetitive DNA in the Olea taxa ranged from ~59% to ~73% of the total genome, showing remarkable differences in terms of composition. Among repeats, we identified 11 major families of tandem repeats, with different abundances in the analysed taxa, five of which were novel discoveries. Interestingly, overall tandem repeat abundance was inversely correlated to that of retrotransposons. This trend might imply a competition in the proliferation of these repeat classes. Indeed, O. paniculata, the species closest to the Olea common ancestor, showed very few tandem-repeated sequences, while it was rich in long terminal repeat retrotransposons, suggesting that the amplification of tandem repeats occurred after its divergence from the Olea ancestor. Furthermore, some tandem repeats were physically localised in closely related O. europaea subspecies (i.e., cultivated olive and O. europaea subsp. cuspidata), which showed a significant difference in tandem repeats abundance. For 4 tandem repeats families, a similar number of hybridisation signals were observed in both subspecies, apparently indicating that, after their dissemination throughout the olive genome, these tandem repeats families differentially amplified maintaining the same positions in each genome. Overall, our research identified the temporal dynamics shaping genome structure during Olea speciation, which represented a singular model of genome evolution in higher plants