The impact of natural modes in plasmonic imaging

Plasmonic imaging is crucial for understanding cellular behaviours for biological sciences, where is used to image and track organelles in cells, such as DNA and virus molecules. Due to the fast dynamics of the intra-cellular processes, it is essential to keep the cells under their native states (i.e. label-free), establishing plasmonic imaging as one of the most powerful tools for studying biological samples. In this article, a theoretical model is presented that accurately predicts the properties of a plasmonic image, paving the route towards the characterization of an imaged nano-object. It is shown that natural modes are not only excited, but actually dominate the intensity and shape of the observed plasmonic image. Hence, the proposed model explains the dynamics forming the plasmonic image and can be used to extract spectroscopy information from current plasmonic imaging techniques

Optical nano-woodpiles: large-area metallic photonic crystals and metamaterials.

Metallic woodpile photonic crystals and metamaterials operating across the visible spectrum are extremely difficult to construct over large areas, because of the intricate three-dimensional nanostructures and sub-50 nm features demanded. Previous routes use electron-beam lithography or direct laser writing but widespread application is restricted by their expense and low throughput. Scalable approaches including soft lithography, colloidal self-assembly, and interference holography, produce structures limited in feature size, material durability, or geometry. By multiply stacking gold nanowire flexible gratings, we demonstrate a scalable high-fidelity approach for fabricating flexible metallic woodpile photonic crystals, with features down to 10 nm produced in bulk and at low cost. Control of stacking sequence, asymmetry, and orientation elicits great control, with visible-wavelength band-gap reflections exceeding 60%, and with strong induced chirality. Such flexible and stretchable architectures can produce metamaterials with refractive index near zero, and are easily tuned across the IR and visible ranges.We acknowledge financial support from EPSRC grant EP/G060649/1, EP/I012060/1, EP/L027151/1, ERC grants LINASS 320503 and 3DIMAGE 291522, EU FP7 280478, and the Leverhulme Trust and Rolls-Royce plc.This is the final version of the article, originally published in Scientific Reports 5, Article number: 8313. DOI: 10.1038/srep08313

Ultrafast nonlinear response of gold gyroid three-dimensional metamaterials

We explore the nonlinear optical response of 3D gyroidal metamaterials, which show >10-fold enhancements compared to all other metallic nanomaterials as well as bulk gold. A simple analytical model for this metamaterial response shows how the reflectivity spectrum scales with the metal fill fraction and the refractive index of the material that the metallic nanostructure is embedded in. The ultrafast response arising from the interconnected 3D nanostructure can be separated into electronic and lattice contributions with strong spectral dependences on the dielectric filling of the gyroids, which invert the sign of the nonlinear transient reflectivity changes. These metamaterials thus provide a wide variety of tuneable nonlinear optical properties, which can be utilised for frequency mixing, optical switching, phase modulators, novel emitters, and enhanced sensing.This is the author's accepted manuscript. The final version is available from APS in Physical Review Applied at http://journals.aps.org/prapplied/abstract/10.1103/PhysRevApplied.2.044002#fulltext#fulltext

Single-molecule optomechanics in "picocavities"

Trapping light with noble metal nanostructures overcomes the diffraction limit and can confine light to volumes typically on the order of 30 cubic nanometers. We found that individual atomic features inside the gap of a plasmonic nanoassembly can localize light to volumes well below 1 cubic nanometer ("picocavities"), enabling optical experiments on the atomic scale. These atomic features are dynamically formed and disassembled by laser irradiation. Although unstable at room temperature, picocavities can be stabilized at cryogenic temperatures, allowing single atomic cavities to be probed for many minutes. Unlike traditional optomechanical resonators, such extreme optical confinement yields a factor of 10$^{6}$ enhancement of optomechanical coupling between the picocavity field and vibrations of individual molecular bonds. This work sets the basis for developing nanoscale nonlinear quantum optics on the single-molecule level.Supported by Project FIS2013-41184-P from MINECO (Ministerio de Economía y Competitividad) and IT756-13 from the Basque government consolidated groups (M.K.S., Y.Z., A. Demetriadou, R.E., and J.A.); the Winton Programme for the Physics of Sustainability (F.B.); the Dr. Manmohan Singh scholarship from St. John’s College (R.C.); the UK National Physical Laboratory (C.C.); the Fellows Gipuzkoa Program of the Gipuzkoako Foru Aldundia via FEDER funds of the European Union “Una manera de hacer Europa” (R.E.); UK Engineering and Physical Sciences Research Council grants EP/G060649/1 and EP/L027151/1; and European Research Council grant LINASS 320503

Suppressed quenching and strong-coupling of Purcell-enhanced single-molecule emission in plasmonic nanocavities

An emitter in the vicinity of a metal nanostructure is quenched by its decay through nonradiative channels, leading to the belief in a zone of inactivity for emitters placed within <10 nm of a plasmonic nanostructure. Here we demonstrate and explain why in tightly coupled plasmonic resonators forming nanocavities “quenching is quenched” due to plasmon mixing. Unlike isolated nanoparticles, such plasmonic nanocavities show mode hybridization, which can massively enhance emitter excitation and decay via radiative channels, here experimentally confirmed by laterally dependent emitter placement through DNA-origami. We explain why this enhancement of excitation and radiative decay can be strong enough to facilitate single-molecule strong coupling, as evident in dynamic Rabi-oscillations

Mouse Stbd1 is N-myristoylated and affects ER-mitochondria association and mitochondrial morphology

Starch binding domain-containing protein 1 (Stbd1) is a carbohydrate-binding protein that has been proposed to be a selective autophagy receptor for glycogen. Here, we show that mouse Stbd1 is a transmembrane endoplasmic reticulum (ER)-resident protein with the capacity to induce the formation of organized ER structures in HeLa cells. In addition to bulk ER, Stbd1 was found to localize to mitochondria-associated membranes (MAMs), which represent regions of close apposition between the ER and mitochondria. We demonstrate that N-myristoylation and binding of Stbd1 to glycogen act as major determinants of its subcellular targeting. Moreover, overexpression of non-myristoylated Stbd1 enhanced the association between ER and mitochondria, and further induced prominent mitochondrial fragmentation and clustering. Conversely, shRNA-mediated Stbd1 silencing resulted in an increase in the spacing between ER and mitochondria, and an altered morphology of the mitochondrial network, suggesting elevated fusion and interconnectivity of mitochondria. Our data unravel the molecular mechanism underlying Stbd1 subcellular targeting, support and expand its proposed function as a selective autophagy receptor for glycogen and uncover a new role for the protein in the physical association between ER and mitochondria

Mapping Nanoscale Hotspots with Single-Molecule Emitters Assembled into Plasmonic Nanocavities Using DNA Origami.

Fabricating nanocavities in which optically active single quantum emitters are precisely positioned is crucial for building nanophotonic devices. Here we show that self-assembly based on robust DNA-origami constructs can precisely position single molecules laterally within sub-5 nm gaps between plasmonic substrates that support intense optical confinement. By placing single-molecules at the center of a nanocavity, we show modification of the plasmon cavity resonance before and after bleaching the chromophore and obtain enhancements of ≥4 × 103 with high quantum yield (≥50%). By varying the lateral position of the molecule in the gap, we directly map the spatial profile of the local density of optical states with a resolution of ±1.5 nm. Our approach introduces a straightforward noninvasive way to measure and quantify confined optical modes on the nanoscale

Recent developments with the new tools for collimation simulations in Xsuite

Simulations of single-particle tracking involving collimation systems need dedicated tools to perform the different tasks needed. These include the accurate description of particle-matter interactions when a tracked particle impacts a collimator jaw; a detailed aperture model to identify the longitudinal location of losses; and others. One such tool is the K2 code in SixTrack, which describes the scattering of high-energy protons in matter. This code has recently been ported into the Xsuite tracking code that is being developed at CERN. Another approach is to couple the tracking with existing tools, such as FLUKA or Geant4, that offer better descriptions of particle-matter interactions and can treat lepton and ion beams. This includes the generation of secondary particles and fragmentation when tracking ions. In addition to the development of coupling with Geant4, the SixTrack-FLUKA coupling has recently been translated and integrated into the Xsuite environment as well. In this paper, we present the ongoing development of these tools. A thorough testing of the new implementation was performed, using as case studies various collimation layout configurations for the LHC Run 3