2,751 research outputs found
The Passion of Gibson: evaluating a recent interpretation of Christ\u27s suffering and death in light of the New Testament
Passion of the Christ Publisher: [S.l.] : Icon Film Distribution, 2004
Device for in-situ cleaving of hard crystals
Cleaving crystals in a vacuum chamber is a simple method for obtaining
atomically flat and clean surfaces for materials that have a preferential
cleaving plane. Most in-situ cleavers use parallel cutting edges that are
applied from two sides on the sample. We found in ambient experiments that
diagonal cutting pliers, where the cleavage force is introduced in a single
point instead of a line work very well also for hard materials. Here, we
incorporate the diagonal cutting plier principle in a design compatible with
ultra-high vacuum requirements. We show optical microscopy (mm scale) and
atomic force microscopy (atomic scale) images of NiO(001) surfaces cleaved with
this device.Comment: 7 pages, 3 figures Submitted to Review of Scientific Instruments
(2005
Regulation of sonic hedgehog-GLI1 downstream target genes PTCH1, Cyclin D2, Plakoglobin, PAX6 and NKX2.2 and their epigenetic status in medulloblastoma and astrocytoma
Abstract Background The Sonic hedgehog (Shh) signaling pathway is critical for cell growth and differentiation. Impairment of this pathway can result in both birth defects and cancer. Despite its importance in cancer development, the Shh pathway has not been thoroughly investigated in tumorigenesis of brain tumors. In this study, we sought to understand the regulatory roles of GLI1, the immediate downstream activator of the Shh signaling pathway on its downstream target genes PTCH1, Cyclin D2, Plakoglobin, NKX2.2 and PAX6 in medulloblastoma and astrocytic tumors. Methods We silenced GLI1 expression in medulloblastoma and astrocytic cell lines by transfection of siRNA against GLI1. Subsequently, we performed RT-PCR and quantitative real time RT-PCR (qRT-PCR) to assay the expression of downstream target genes PTCH1, Cyclin D2, Plakoglobin, NKX2.2 and PAX6. We also attempted to correlate the pattern of expression of GLI1 and its regulated genes in 14 cell lines and 41 primary medulloblastoma and astrocytoma tumor samples. We also assessed the methylation status of the Cyclin D2 and PTCH1 promoters in these 14 cell lines and 58 primary tumor samples. Results Silencing expression of GLI1 resulted up-regulation of all target genes in the medulloblastoma cell line, while only PTCH1 was up-regulated in astrocytoma. We also observed methylation of the cyclin D2 promoter in a significant number of astrocytoma cell lines (63%) and primary astrocytoma tumor samples (32%), but not at all in any medulloblastoma samples. PTCH1 promoter methylation was less frequently observed than Cyclin D2 promoter methylation in astrocytomas, and not at all in medulloblastomas. Conclusions Our results demonstrate different regulatory mechanisms of Shh-GLI1 signaling. These differences vary according to the downstream target gene affected, the origin of the tissue, as well as epigenetic regulation of some of these genes.http://deepblue.lib.umich.edu/bitstream/2027.42/78313/1/1471-2407-10-614.xmlhttp://deepblue.lib.umich.edu/bitstream/2027.42/78313/2/1471-2407-10-614.pdfPeer Reviewe
Theory and Application of Dissociative Electron Capture in Molecular Identification
The coupling of an electron monochromator (EM) to a mass spectrometer (MS)
has created a new analytical technique, EM-MS, for the investigation of
electrophilic compounds. This method provides a powerful tool for molecular
identification of compounds contained in complex matrices, such as
environmental samples. EM-MS expands the application and selectivity of
traditional MS through the inclusion of a new dimension in the space of
molecular characteristics--the electron resonance energy spectrum. However,
before this tool can realize its full potential, it will be necessary to create
a library of resonance energy scans from standards of the molecules for which
EM-MS offers a practical means of detection. Here, an approach supplementing
direct measurement with chemical inference and quantum scattering theory is
presented to demonstrate the feasibility of directly calculating resonance
energy spectra. This approach makes use of the symmetry of the
transition-matrix element of the captured electron to discriminate between the
spectra of isomers. As a way of validating this approach, the resonance values
for twenty-five nitrated aromatic compounds were measured along with their
relative abundance. Subsequently, the spectra for the isomers of nitrotoluene
were shown to be consistent with the symmetry-based model. The initial success
of this treatment suggests that it might be possible to predict negative ion
resonances and thus create a library of EM-MS standards.Comment: 18 pages, 7 figure
An Efficient Algorithm for Optimizing Adaptive Quantum Metrology Processes
Quantum-enhanced metrology infers an unknown quantity with accuracy beyond
the standard quantum limit (SQL). Feedback-based metrological techniques are
promising for beating the SQL but devising the feedback procedures is difficult
and inefficient. Here we introduce an efficient self-learning
swarm-intelligence algorithm for devising feedback-based quantum metrological
procedures. Our algorithm can be trained with simulated or real-world trials
and accommodates experimental imperfections, losses, and decoherence
Establishment of detailed reference values for luteinizing hormone, follicle stimulating hormone, estradiol, and progesterone during different phases of the menstrual cycle on the Abbott ARCHITECT® analyzer
During a normal menstrual cycle, serum levels of luteinizing hormone (LH), follicle-stimulating hormone (FSH), estradiol, and progesterone can vary widely between cycles for the same woman, as well as between different woman. Reliable reference values based on the local population are important for correct interpretation of laboratory results. The purpose of our study was to determine detailed reference values for these hormones throughout the menstrual cycle using the Abbott ARCHITECT system. From 20 volunteers (age 20-36years) with normal cycles and no use of oral contraceptives, samples were taken every day during their cycle. Volunteers received three vaginal ultrasound examinations (days 10 and 13, and 1 or 2days after ovulation) to measure follicular and corpus luteum development. Hormone levels were measured using the corresponding ARCHITECT assay and were synchronized to the LH peak. Median, and 5th and 95th percentile values were determined for each day of the cycle, as well as for early follicular (days −15 to −6), late follicular (days −5 to −1), LH peak (day 0), early luteal (+1 to +4), mid-luteal (days +5 to +9), and late luteal (days +10 to +14) phases of the cycle. Based on our data, we were able to establish detailed reference values for LH, FSH, estradiol, and progesterone, which should aid in the interpretation of results for these reproductive hormones in a variety of circumstances. Clin Chem Lab Med 2006;44:883-
Elucidating the crystal-chemistry of Jbel Rhassoul stevensite (Morocco) by advanced analytical techniques
The composition of Rhassoul clay is controversial regarding the nature of the puremineral clay fraction which is claimed to be stevensite rather than saponite. In this study, the raw and mineral fractions were characterized using various techniques including Fourier transform infrared spectroscopy and magic angle spinning nuclear magnetic resonance (MAS NMR). The isolated fine clay mineral fraction contained a larger amount of Al (>1 wt.%) than that reported for other stevensite occurrences. The 27Al MAS NMR technique confirmed that the mineral is stevensite in which the Al is equally split between the tetrahedral and octahedral coordination sites. The 29Si NMR spectrum showed a single unresolved resonance indicating little or no short-range ordering of silicon. The chemical composition of the stevensite from Jbel Rhassoul was determined to be ((Na0.25K0.20 (Mg5.04Al0.37Fe0.20&0.21)5.61(Si7.76Al0.24)8O20(OH)4). This formula differs from previous compositions described from this locality and shows it to be an Al-bearing lacustrine clay mineral
Revealing common artifacts due to ferromagnetic inclusions in highly-oriented pyrolytic graphite
We report on an extensive investigation to figure out the origin of
room-temperature ferromagnetism that is commonly observed by SQUID magnetometry
in highly-oriented pyrolytic graphite (HOPG). Electron backscattering and X-ray
microanalysis revealed the presence of micron-size magnetic clusters
(predominantly Fe) that are rare and would be difficult to detect without
careful search in a scanning electron microscope in the backscattering mode.
The clusters pin to crystal boundaries and their quantities match the amplitude
of typical ferromagnetic signals. No ferromagnetic response is detected in
samples where we could not find such magnetic inclusions. Our experiments show
that the frequently reported ferromagnetism in pristine HOPG is most likely to
originate from contamination with Fe-rich inclusions introduced presumably
during crystal growth.Comment: 8 pages, 7 figure
Resolution of the stochastic strategy spatial prisoner's dilemma by means of particle swarm optimization
We study the evolution of cooperation among selfish individuals in the
stochastic strategy spatial prisoner's dilemma game. We equip players with the
particle swarm optimization technique, and find that it may lead to highly
cooperative states even if the temptations to defect are strong. The concept of
particle swarm optimization was originally introduced within a simple model of
social dynamics that can describe the formation of a swarm, i.e., analogous to
a swarm of bees searching for a food source. Essentially, particle swarm
optimization foresees changes in the velocity profile of each player, such that
the best locations are targeted and eventually occupied. In our case, each
player keeps track of the highest payoff attained within a local topological
neighborhood and its individual highest payoff. Thus, players make use of their
own memory that keeps score of the most profitable strategy in previous
actions, as well as use of the knowledge gained by the swarm as a whole, to
find the best available strategy for themselves and the society. Following
extensive simulations of this setup, we find a significant increase in the
level of cooperation for a wide range of parameters, and also a full resolution
of the prisoner's dilemma. We also demonstrate extreme efficiency of the
optimization algorithm when dealing with environments that strongly favor the
proliferation of defection, which in turn suggests that swarming could be an
important phenomenon by means of which cooperation can be sustained even under
highly unfavorable conditions. We thus present an alternative way of
understanding the evolution of cooperative behavior and its ubiquitous presence
in nature, and we hope that this study will be inspirational for future efforts
aimed in this direction.Comment: 12 pages, 4 figures; accepted for publication in PLoS ON
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