139La NMR evidence for phase solitons in the ground state of overdoped manganites

Hole doped transition metal oxides are famous due to their extraordinary charge transport properties, such as high temperature superconductivity (cuprates) and colossal magnetoresistance (manganites). Astonishing, the mother system of these compounds is a Mott insulator, whereas important role in the establishment of the metallic or superconducting state is played by the way that holes are self-organized with doping. Experiments have shown that by adding holes the insulating phase breaks into antiferromagnetic (AFM) regions, which are separated by hole rich clumps (stripes) with a rapid change of the phase of the background spins and orbitals. However, recent experiments in overdoped manganites of the La(1-x)Ca(x)MnO(3) (LCMO) family have shown that instead of charge stripes, charge in these systems is organized in a uniform charge density wave (CDW). Besides, recent theoretical works predicted that the ground state is inhomogeneously modulated by orbital and charge solitons, i.e. narrow regions carrying charge (+/-)e/2, where the orbital arrangement varies very rapidly. So far, this has been only a theoretical prediction. Here, by using 139La Nuclear Magnetic Resonance (NMR) we provide direct evidence that the ground state of overdoped LCMO is indeed solitonic. By lowering temperature the narrow NMR spectra observed in the AFM phase are shown to wipe out, while for T<30K a very broad spectrum reappears, characteristic of an incommensurate (IC) charge and spin modulation. Remarkably, by further decreasing temperature, a relatively narrow feature emerges from the broad IC NMR signal, manifesting the formation of a solitonic modulation as T->0.Comment: 5 pages, 4 figure

High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells.

Reprogramming somatic cells to induced pluripotent stem cells (iPSCs) offers the possibility of studying the molecular mechanisms underlying human diseases in cell types difficult to extract from living patients, such as neurons and cardiomyocytes. To date, studies have been published that use small panels of iPSC-derived cell lines to study monogenic diseases. However, to study complex diseases, where the genetic variation underlying the disorder is unknown, a sizable number of patient-specific iPSC lines and controls need to be generated. Currently the methods for deriving and characterizing iPSCs are time consuming, expensive, and, in some cases, descriptive but not&nbsp;quantitative. Here we set out to develop a set of simple methods that reduce cost and increase throughput in the characterization of iPSC lines. Specifically, we outline methods for high-throughput quantification of surface markers, gene expression analysis of in&nbsp;vitro differentiation potential, and evaluation of karyotype with markedly reduced cost

Structure of HrcQ(B)-C, a conserved component of the bacterial type III secretion systems

Type III secretion systems enable plant and animal bacterial pathogens to deliver virulence proteins into the cytosol of eukaryotic host cells, causing a broad spectrum of diseases including bacteremia, septicemia, typhoid fever, and bubonic plague in mammals, and localized lesions, systemic wilting, and blights in plants. In addition, type III secretion systems are also required for biogenesis of the bacterial flagellum. The HrcQ(B) protein, a component of the secretion apparatus of Pseudomonas syringae with homologues in all type III systems, has a variable N-terminal and a conserved C-terminal domain (HrcQ(B)-C). Here, we report the crystal structure of HrcQ(B)-C and show that this domain retains the ability of the full-length protein to interact with other type III components. A 3D analysis of sequence conservation patterns reveals two clusters of residues potentially involved in protein–protein interactions. Based on the analogies between HrcQ(B) and its flagellum homologues, we propose that HrcQ(B)-C participates in the formation of a C-ring-like assembly

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.

Large-scale collections of induced pluripotent stem cells (iPSCs) could serve as powerful model systems for examining how genetic variation affects biology and disease. Here we describe the iPSCORE resource: a collection of systematically derived and characterized iPSC lines from 222 ethnically diverse individuals that allows for both familial and association-based genetic studies. iPSCORE lines are pluripotent with high genomic integrity (no or low numbers of somatic copy-number variants) as determined using high-throughput RNA-sequencing and genotyping arrays, respectively. Using iPSCs from a family of individuals, we show that iPSC-derived cardiomyocytes demonstrate gene expression patterns that cluster by genetic background, and can be used to examine variants associated with physiological and disease phenotypes. The iPSCORE collection contains representative individuals for risk and non-risk alleles for&nbsp;95% of SNPs associated with human phenotypes through genome-wide association studies. Our study demonstrates the utility of iPSCORE for examining how genetic variants influence molecular and physiological traits in iPSCs and derived cell lines

Sex-specific regulation of chemokine Cxcl5/6 controls neutrophil recruitment and tissue injury in acute inflammatory states

This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.Barts and The London Trustees Studentship (SM), Marie Curie fellowships (MB, JD), Arthritis Research UK career development fellowship (JW), William Harvey Research Foundation grant (JW/RSS), Kidney Research UK fellowship (NSAP), Barts and The London Vacation Scholarship (ISN), Wellcome Trust senior fellowship (DWG), and a Wellcome Trust career development fellowship (RSS). This work forms part of the research themes contributing to the translational research portfolio of Barts and The London Cardiovascular Biomedical Research Unit, which is supported and funded by National Institute for Health Researc

Neutrophils in cancer: neutral no more

Neutrophils are indispensable antagonists of microbial infection and facilitators of wound healing. In the cancer setting, a newfound appreciation for neutrophils has come into view. The traditionally held belief that neutrophils are inert bystanders is being challenged by the recent literature. Emerging evidence indicates that tumours manipulate neutrophils, sometimes early in their differentiation process, to create diverse phenotypic and functional polarization states able to alter tumour behaviour. In this Review, we discuss the involvement of neutrophils in cancer initiation and progression, and their potential as clinical biomarkers and therapeutic targets

A myocutaneous flap variation for management of distal hindlimb wounds in the cat

Management of complex feline hindlimb defects is challenging. However, the use of a split semitendinosus myocutaneous (SST) flap for coverage has not yet been reported. The objective of this study was to describe the SST flap and compare it with second-intention healing for the management of complex tibial defects in cats. Two wounds were created on each tibia of 12 purpose-bred laboratory DSH cats. Wounds in group A (n=12) were covered with SST flaps and those in group B (n=12) were left to heal by second intention. In both groups, clinical assessment scoring and planimetry were performed between 1 and 30 postoperative days. CT angiography (CTA) and histological examination were performed on days 0, 10, and 30 and on days 0, 14, 6, and 12 months postoperatively, respectively. Group A had significantly higher assessment scores on days 7 (p=0.002), 14 (p&lt;0.001), 21 (p=0.001), and 30 (p=0.008). The time to complete healing in group A (32,42 days) was significantly higher than that to complete epithelial coverage in group B (24.67 days) (p=0.001). On CTA, significant differences were observed in ST muscle density which was higher on day 10 compared to 0 on the proximal (dP) (p&lt;0.001) and medial (dM) points (p=0,020, p&lt;0,001, p&lt;0,001 respectively) in all three different phases. For the distal (dD) point, the measurement was significantly higher in the precontrast phase (p=0.001) and on day 10 compared today 30 atn all points in all three phases (p&lt;0.001). The caliber of the distal caudal femoral artery and vein and of the proximal gluteal artery and vein were significantly higher on day 10 than on day 0 (p&lt;0.001), on days 10 to 30 (p&lt;0.001), and on days 30 to 0 (p=0.004, p=0.006, p=0.011, p=0.007, respectively). Histologically significant differences were observed on inflammation and muscle cell degeneration which were higher on day 14 than on day 0 and 6 months (p&lt;0.001, p&lt;0.001, p&lt;0.001, p=0.007 respectively). Neovascularization and fibrosis were significantly higher on day 14 than on day 0 (p=0.010 and p=0.009, respectively). In conclusion, although the ST muscle can be safely longitudinally split and cover tibial defects, the SST flap is less efficient than second-intention healing in terms of the time to complete wound healing

The basal epithelial marker P-cadherin associates with breast cancer cell populations harboring a glycolytic and acid-resistant phenotype

"BMC Cancer 2014 14:734"BACKGROUND: Cancer stem cells are hypoxia-resistant and present a preponderant glycolytic metabolism. These characteristics are also found in basal-like breast carcinomas (BLBC), which show increased expression of cancer stem cell markers.Recently, we demonstrated that P-cadherin, a biomarker of BLBC and a poor prognostic factor in this disease, mediates stem-like properties and resistance to radiation therapy. Thus, the aim of the present study was to evaluate if P-cadherin expression was associated to breast cancer cell populations with an adapted phenotype to hypoxia. METHODS: Immunohistochemistry was performed to address the expression of P-cadherin, hypoxic, glycolytic and acid-resistance biomarkers in primary human breast carcinomas. In vitro studies were performed using basal-like breast cancer cell lines. qRT-PCR, FACS analysis, western blotting and confocal microscopy were used to assess the expression of P-cadherin after HIF-1a stabilization, achieved by CoCl2 treatment. siRNA-mediated knockdown was used to silence the expression of several targets and qRT-PCR was employed to evaluate the effects of P-cadherin on HIF-1a signaling. P-cadherin high and low breast cancer cell populations were sorted by FACS and levels of GLUT1 and CAIX were assessed by FACS and western blotting. Mammosphere forming efficiency was used to determine the stem cell activity after specific siRNA-mediated knockdown, further confirmed by western blotting. RESULTS: We demonstrated that P-cadherin overexpression was significantly associated with the expression of HIF-1a, GLUT1, CAIX, MCT1 and CD147 in human breast carcinomas. In vitro, we showed that HIF-1a stabilization was accompanied by increased membrane expression of P-cadherin and that P-cadherin silencing led to a decrease of the mRNA levels of GLUT1 and CAIX. We also found that the cell fractions harboring high levels of P-cadherin were the same exhibiting more GLUT1 and CAIX expression. Finally, we showed that P-cadherin silencing significantly decreases the mammosphere forming efficiency in the same range as the silencing of HIF-1a, CAIX or GLUT1, validating that all these markers are being expressed by the same breast cancer stem cell population. CONCLUSIONS: Our results establish a link between aberrant P-cadherin expression and hypoxic, glycolytic and acid-resistant breast cancer cells, suggesting a possible role for this marker in cancer cell metabolismo.This work was funded by FEDER funds through the COMPETE Program (Programa Operacional Factores de Competitividade) and by national funds through FCT (Portuguese Foundation for Science and Technology, Portugal), mainly in the context of the scientific project PTDC/SAU-GMG/120049/2010-FCOMP-01-0124-FEDER-021209, and partially by PTDC/SAU-FCF/104347/2008. FCT funded the research grants of BS (SFRH/BD/69353/2010), ASR (SFRH/BPD/75705/2011), ARN (grant from the project PTDC/SAU-GMG/120049/2010), CP (SFRH/BPD/69479/2010), AV (SFRH/BPD/90303/2012), as well as JP, with Programa Ciencia 2007 (Contratacao de Doutorados para o SCTN - financiamento pelo POPH - QREN - Tipologia 4.2 - Promocao do Emprego Cientifico, comparticipado pelo Fundo Social Europeu e por fundos nacionais do MCTES) and Programa IFCT (FCT Investigator). IPATIMUP is an Associate Laboratory of the Portuguese Ministry of Science, Technology and Higher Education and is partially supported by FCT