Writhing Geometry of Open DNA

Motivated by recent experiments on DNA torsion-force-extension characteristics we consider the writhing geometry of open stiff molecules. We exhibit a cyclic motion which allows arbitrarily large twisting of the end of a molecule via an activated process. This process is suppressed for forces larger than femto-Newtons which allows us to show that experiments are sensitive to a generalization of the Calugareanu-White formula for the writhe. Using numerical methods we compare this formulation of the writhe with recent analytic calculations.Comment: 12 pages 10 figures. Revtex

Experimental response of RC columns built with plain bars under unidirectional cyclic loading

A large number of existing reinforced concrete (RC) buildings structures were designed and built before mid-70’s, when the reinforcing bars had plain surface and prior to the enforcement of the modern seismic-oriented design philosophies. This paper describes a series of unidirectional cyclic tests performed on seven full-scale columns built with plain reinforcing bars, without adequate reinforcement detailing for seismic demands. The specimens have different reinforcing steel details and different cross sections. A further monotonic test was also carried out for one of the specimens and an additional column, built with deformed bars, was cyclically tested for comparison with the results for the specimens with plain bars. The main experimental results are presented and discussed. The influence of bond properties on the column behaviour is evidenced by differences observed between the cyclic response of similar specimens with plain and deformed bars. The influence of reinforcement amount and displacement history on the column response is also investigated

Cyclic response of RC beam-column joints reinforced with plain bars: an experimental testing campaign

Existing reinforced concrete (RC) buildings constructed until the mid-70’s, with plain reinforcing bars, are expected to behave poorly when subjected to earthquake actions. This paper describes an experimental program designed to investigate the influence of poor detailing on the cyclic behaviour of RC beam-column joint elements. Cyclic tests were performed on five interior and five exterior full-scale beam-column joints with different detailing characteristics and reinforced with plain bars. An additional joint of each type was built with deformed bars for an evaluation of the influence of bond properties on the cyclic response of the structural element. The force-displacement global response, energy dissipation, equivalent damping and damage behaviour of the joints was investigated and the main results are presented and discussed. The experimental results indicate that the bond-slip mechanism has significantly influenced the cyclic response of the beam-column joints. The specimens built with plain bars showed lower energy dissipation, stiffness and equivalent damping

Nonlinear modeling of the cyclic response of RC columns

Cyclic load reversals (like those induced by earthquakes) result in accelerated bond degradation, leading to significant bar slippage. The bond-slip mechanism is reported to be one of the most common causes of damage and even collapse of existing RC structures subjected to earthquake loading. RC structures with plain reinforcing bars, designed and built prior to the enforcement of the modern seismic-oriented design philosophies, are particularly sensitive to bond degradation. However, perfect bond conditions are typically assumed in the numerical analysis of RC structures. This paper describes the numerical modeling of the cyclic response of two RC columns, one built with deformed bars and the other with plain bars and structural detailing similar to that typically adopted in pre-1970s structures. For each column, different modeling strategies to simulate the column response were tested. Models were built using the OpenSees and the SeismoStruct platforms, and calibrated with the available tests results. Within each platform, different types of nonlinear elements were used to represent the columns. Bond-slip effects were included in the OpenSees models resorting to a simple modeling strategy. The models and the parameters adopted are presented and discussed. Comparison is established between the most relevant experimental results and the corresponding results provided by the numerical models. Conclusions are drawn about the capacity of the tested models to simulate the columns response and about the influence of considering or not considering the effects of bars slippage

Empirical fragility assessment of buildings affected by the 2011 Great East Japan tsunami using improved statistical models

Tsunamis are destructive natural phenomena which cause extensive damage to the built environment, affecting the livelihoods and economy of the impacted nations. This has been demonstrated by the tragic events of the Indian Ocean tsunami in 2004, or the Great East Japan tsunami in 2011. Following such events, a few studies have attempted to assess the fragility of the existing building inventory by constructing empirical stochastic functions, which relate the damage to a measure of tsunami intensity. However, these studies typically fit a linear statistical model to the available damage data, which are aggregated in bins of similar levels of tsunami intensity. This procedure, however, cannot deal well with aggregated data, low and high damage probabilities, nor does it result in the most realistic representation of the tsunami-induced damage. Deviating from this trend, the present study adopts the more realistic generalised linear models which address the aforementioned disadvantages. The proposed models are fitted to the damage database, containing 178,448 buildings surveyed in the aftermath of the 2011 Japanese tsunami, provided by the Ministry of Land, Infrastructure Transport and Tourism in Japan. In line with the results obtained in previous studies, the fragility curves show that wooden buildings (the dominant construction type in Japan) are the least resistant against tsunami loading. The diagnostics show that taking into account both the building’s construction type and the tsunami flow depth is crucial to the quality of the damage estimation and that these two variables do not act independently. In addition, the diagnostics reveal that tsunami flow depth estimates low levels of damage reasonably well; however, it is not the most representative measure of intensity of the tsunami for high damage states (especially structural damage). Further research using disaggregated damage data and additional explanatory variables is required in order to obtain reliable model estimations of building damage probability

Comment on "Elasticity Model of a Supercoiled DNA Molecule"

We perform simulations to numerically study the writhe distribution of a stiff polymer. We compare with analytic results of Bouchiat and Mezard (PRL 80 1556- (1998); cond-mat/9706050).Comment: 1 page, 1 figure revtex

Redução da viabilidade de esporângios de Plasmopara viticola por bactérias nativas do filoplano da videira.

Resumo: O míldio é uma das principais doenças da videira, capaz de causar danos significativos à cultura e aumentar os custos de produção. Seu controle demanda o uso intensivo de agrotóxicos, cujos resíduos são indesejáveis. Este trabalho teve como objetivo investigar o potencial uso de bactérias do filoplano em reduzir a viabilidade de esporângios de Plasmopara viticola. Foram testados trinta e cinco isolados bacterianos obtidos do filoplano de videira. Os testes de antagonismo foram feitos em lâminas de microscopia e em discos de folha, adicionando-se 50 microL de uma suspensão bacteriana e 50 microL de uma suspensão de esporângios. Nos testes em lâmina de microscopia, vinte e nove isolados inibiram a germinação dos esporângios de Plasmopara viticola. Destes, os isolados 1, 37 e 12 se destacaram, por serem capazes de inibir também a liberação de zoósporos. Em discos de folha, o isolado 1 foi o único capaz de inibir a liberação dos zoósporos, significativamente em relação à testemunha. Nesta condição, não houve a germinação dos esporângios, apenas a liberação de zoósporos. Abstract: The downy mildew is one of the main grapevine diseases, able to cause significant damage to the crop and increase production costs. It?s control demand intensive use of pesticides, which residues are undesirable. This study aimed to investigate the potential of phylloplane bacteria in reducing the viability of sporangia of Plasmopara viticola. Thirty-five bacterial isolates from phylloplane of grapevine were tested. The antagonism tests were conducted on microscopy glass blades and on leaf discs, adding microL of a bacterial suspension and 50 microL of a suspension of sporangia. Twenty-nine isolates inhibited the germination of the sporangia of Plasmopara viticola in tests conducted on glass blades. Of these, isolates 1, 37 and 12 were able to inhibit the release of zoospores. In the leaf discs test, the isolate 1 was the single able to inhibit the release of zoospores, significant compared to the control. In this condition, there wasn?t germination of sporangia, only zoospores release

The radio emission pattern of air showers as measured with LOFAR - a tool for the reconstruction of the energy and the shower maximum

The pattern of the radio emission of air showers is finely sampled with the Low-Frequency ARray (LOFAR). A set of 382 measured air showers is used to test a fast, analytic parameterization of the distribution of pulse powers. Using this parameterization we are able to reconstruct the shower axis and give estimators for the energy of the air shower as well as the distance to the shower maximum.Comment: 15 pages, 10 figures, accepted for publication in JCA

Cosmic Ray Physics with the LOFAR Radio Telescope

The LOFAR radio telescope is able to measure the radio emission from cosmic ray induced air showers with hundreds of individual antennas. This allows for precision testing of the emission mechanisms for the radio signal as well as determination of the depth of shower maximum $X_{\max}$, the shower observable most sensitive to the mass of the primary cosmic ray, to better than 20 g/cm$^2$. With a densely instrumented circular area of roughly 320 m$^2$, LOFAR is targeting for cosmic ray astrophysics in the energy range $10^{16}$ - $10^{18}$ eV. In this contribution we give an overview of the status, recent results, and future plans of cosmic ray detection with the LOFAR radio telescope.Comment: Proceedings of the 26th Extended European Cosmic Ray Symposium (ECRS), Barnaul/Belokurikha, 201