An Extensively Humanized Mouse Model to Predict Pathways of Drug Disposition and Drug/Drug Interactions, and to Facilitate Design of Clinical Trials

Species differences in drug metabolism and disposition can confound the extrapolation of in vivo pharmacokinetic data to man, and also profoundly compromise drug efficacy studies due to differences in pharmacokinetics, in metabolites produced (which are often pharmacologically active) and in differential activation of the transcription factors CAR and PXR which regulate the expression of enzymes such as P450s and drug transporters. These differences have gained additional importance as a consequence of the use of genetically modified mouse models for drug efficacy testing and also patient-derived xenografts to predict individual patient responses to anti-cancer drugs. A number of humanised mouse models for cytochrome P450s, CAR and PXR have been reported. However, the utility of these models has been compromised as a consequence of the redundancy of P450 reactions across gene families where the remaining murine P450s can metabolise the compounds being tested. To remove this confounding factor and create a mouse model which more closely reflects human pathways of drug disposition we have substituted 33 murine P450s from the major gene families involved in drug disposition, together with Car and Pxr, for human CAR, PXR, CYP1A1, CYP1A2, CYP2C9, CYP2D6, CYP3A4 and CYP3A7. We have also created a mouse line where 34 P450s have been deleted from the mouse genome. We demonstrate using model compounds and anti-cancer drugs how these mouse lines can be applied to predict drug-drug interactions in patients and discuss their potential application in the more informed design of clinical trials and the personalised treatment of cancer

Viability and dormancy of the Clematis vitalba aerial seed bank.

Old man's beard (Clematis vitalba L.) is a liana species that has become invasive in many areas of its introduced range. Seeds are produced in abundance and are both physiologically and morphologically dormant upon maturity. To understand the importance of seeds to its invasiveness, changes in viability and dormancy of the aerial seed bank were tracked throughout the after-ripening period and during storage. Seeds collected every second month for 2 years were subjected to germination tests. Other seeds stored in outdoor ambient conditions or in a dry, chilled state were dissected before, during, and after imbibition, as well as during incubation, to measure embryo size. Less than 72% of seeds on the mother plant were viable. Viable seeds remained completely morpho-physiologically dormant throughout autumn, even when treated with nitrate. Physiological dormancy declined in response to seasonal changes, yet morphological dormancy did not change until seeds had been exposed to appropriate germination conditions for several days. Fully dormant autumn seeds decayed at higher rates during incubation than partially or fully after-ripened seeds, which were also more germinable and less dormant. Furthermore, seeds incubated in complete darkness were more likely to decay or remain dormant than those exposed to light. This study demonstrates that fewer than three-quarters of seeds produced are viable and further decay occurs after dispersal, yet total fertility is still very high, with enormous propagule pressure from seeds alone. Viable seeds are protected with two forms of dormancy; morphological dormancy requires additional germination cues in order to break after seasonal changes break physiological dormancy.fals

Effects of vegetative ground cover on seedling establishment of the invasive liana old man's beard (Clematis vitalba)

Opportunistic use of limited resources is often attributed to invasive species, and as a mature vine, old man’s beard (Clematis vitalba L.) is known to have devastating negative impacts on the trees it colonizes. No previous experimental studies have been published on how easily C. vitalba seedlings can colonize ground covered by other established vegetation. This species has had an increasing presence in forestry blocks and riparian zones in New Zealand, both of which usually maintain some grass cover. To determine the importance of vegetative ground cover for preventing ingress of new C. vitalba plants, this study looked at seedling emergence through the soil and establishment of C. vitalba within four different levels of grassy cover at three sites: (1) ground kept bare after vegetation removal; (2) ground bare at C. vitalba seed sowing, but thereafter allowed to recover; (3) vegetative cover trimmed to 4 cm high at C. vitalba sowing, and then allowed to recover; and (4) unmanaged vegetation. At the highest level of vegetation density (unmanaged vegetation), no C. vitalba seedlings were ever detected throughout a 1-yr monitoring period. At lower ground cover densities, poor seedling emergence was observed, with a maximum of 36% of seeds sown in bare plots producing a seedling. Also, seedlings did not survive past 1 yr, except in bare plots or in plots where vegetation grew sparsely. However, seedlings that did survive began producing multiple stems within 6 mo of emergence. These results indicate that obstacles to seedling emergence and poor development at the young seedling stage when vegetative cover is dense severely limit C. vitalba’s chances to invade new sites via seed. Yet some successful seedling recruitment does occur due to the magnitude of the propagule pressure on the landscape and the difficulty of maintaining high-density ground cover across large areas throughout the year.fals

Efficacy of herbicides for selective control of an invasive liana, old man's beard (Clematis vitalba)

Old man's beard is a woody liana that has become an invasive weed in many areas of its introduction, through its vigorous spread and negative impacts on the tree hosts it climbs. Control techniques that improve precision and reduce non-target damage are increasingly preferred for weed control yet have not been compared in published research for use against old man's beard. Field experiments in New Zealand were conducted to: (i) assess targeted herbicide techniques for control of this weed's climbing stems when growing among trees and (ii) assess foliar herbicides for control of creeping stems in ruderal sites. For climbing stems, triclopyr in oil was applied around the circumference of woody stems near their base, which was compared with cutting the stems and applying concentrated glyphosate gel (45% ai) to each cut end. Herbicides were applied in autumn directly to individual stem bases of the weed, thereby protecting tree hosts and other non-target vegetation. The basal application of triclopyr to intact stems was highly effective (>95% mortality) with no damage to nearby trees noted. The glyphosate gel applications to cut stems were less effective (56% mortality by 2 yr after treatment). For creeping stems in grass-dominated ruderal sites, selective foliar herbicide sprays had not been previously juxtaposed to compare control of old man's beard. Three selective sprays that do not damage existing grass cover were applied in autumn at their recommended rates: (i) metsulfuron; (ii) triclopyr; and (iii) a mixture of triclopyr, picloram, and aminopyralid. All herbicide treatments provided effective control, although metsulfuron had a negative effect on grass vigor, which might allow new establishment of old man's beard seedlings by competitive release. These results provide effective options that reduce non-target damage for control of both climbing and creeping old man's beard stems.fals

Potential importance of vegetative spread and fragment regeneration for invasiveness of Clematis vitalba

Identifying characteristics of invasive species or growth forms that facilitate their range expansion is critical for management. Clematis vitalba L. (old man's beard) is an invasive temperate liana in many areas of its introduction, yet its seedlings do not thrive in circumstances where resources are limited. Although some lianas in both tropical and temperate climates have been shown to spread by clonal stems along the ground, the bulk of previous research on C. vitalba reproduction has focused largely on aspects of seed ecology. The vegetative growth of the species is poorly understood. The first objective of our study was to evaluate the use of vegetative spread by C. vitalba as a means of local dispersal and population growth. We excavated ten 1-m2 plots in infested riparian zones and found an extensive, branching network of creeping stems, both above and below ground. Our second objective was to test the ability of C. vitalba stem fragments to act as vegetative propagules. After 4 months, ~50% of two-node fragments had regenerated, from both creeping and climbing stems. These studies help explain how a temperate liana forms populations and dominate ecological communities. The findings provide good evidence that C. vitalba may rely quite heavily on asexual reproduction. In addition, the results document liana stem phenotypic plasticity; fragmented climbing stems are just as likely as fragmented creeping stems to reprogram shoot tissue systems, generate roots and regrow as independent plants.fals

Multi-messenger observations of a binary neutron star merger

On 2017 August 17 a binary neutron star coalescence candidate (later designated GW170817) with merger time 12:41:04 UTC was observed through gravitational waves by the Advanced LIGO and Advanced Virgo detectors. The Fermi Gamma-ray Burst Monitor independently detected a gamma-ray burst (GRB 170817A) with a time delay of ~1.7 s with respect to the merger time. From the gravitational-wave signal, the source was initially localized to a sky region of 31 deg2 at a luminosity distance of 40+8-8 Mpc and with component masses consistent with neutron stars. The component masses were later measured to be in the range 0.86 to 2.26 Mo. An extensive observing campaign was launched across the electromagnetic spectrum leading to the discovery of a bright optical transient (SSS17a, now with the IAU identification of AT 2017gfo) in NGC 4993 (at ~40 Mpc) less than 11 hours after the merger by the One- Meter, Two Hemisphere (1M2H) team using the 1 m Swope Telescope. The optical transient was independently detected by multiple teams within an hour. Subsequent observations targeted the object and its environment. Early ultraviolet observations revealed a blue transient that faded within 48 hours. Optical and infrared observations showed a redward evolution over ~10 days. Following early non-detections, X-ray and radio emission were discovered at the transient’s position ~9 and ~16 days, respectively, after the merger. Both the X-ray and radio emission likely arise from a physical process that is distinct from the one that generates the UV/optical/near-infrared emission. No ultra-high-energy gamma-rays and no neutrino candidates consistent with the source were found in follow-up searches. These observations support the hypothesis that GW170817 was produced by the merger of two neutron stars in NGC4993 followed by a short gamma-ray burst (GRB 170817A) and a kilonova/macronova powered by the radioactive decay of r-process nuclei synthesized in the ejecta

Toward a multiscale modeling framework for understanding serotonergic function

Despite its importance in regulating emotion and mental wellbeing, the complex structure and function of the serotonergic system present formidable challenges toward understanding its mechanisms. In this paper, we review studies investigating the interactions between serotonergic and related brain systems and their behavior at multiple scales, with a focus on biologically-based computational modeling. We first discuss serotonergic intracellular signaling and neuronal excitability, followed by neuronal circuit and systems levels. At each level of organization, we will discuss the experimental work accompanied by related computational modeling work. We then suggest that a multiscale modeling approach that integrates the various levels of neurobiological organization could potentially transform the way we understand the complex functions associated with serotonin

Interaction of cimetidine with P450 in a mouse model of hepatocarcinogenesis initiation

Many drugs and xenobiotics are lipophilic and they should be transformed into more polar water soluble compounds to be excreted. Cimetidine inhibits cytochrome P450. The aim of this study was to investigate the preventive and/or reversal action of cimetidine on cytochrome P450 induction and other metabolic alterations provoked by the carcinogen p-dimethylaminoazobenzene. A group of male CF1 mice received a standard laboratory diet and another group was placed on dietary p-dimethylaminoazobenzene (0.5% w w−1). After 40 days of treatment, animals of both groups received p-dimethylaminoazobenzene and two weekly doses of cimetidine (120 mg kg−1, i.p.) during a following period of 35 days. Cimetidine prevented and reversed δ-aminolevulinate synthetase induction and cytochrome P450 enhancement provoked by p-dimethylaminoazobenzene. However, cimetidine did not restore haem oxygenase activity decreased by p-dimethylaminoazobenzene. Enhancement in glutathione S-transferase activity provoked by p-dimethylaminoazobenzene, persisted in those animals then treated with cimetidine. This drug did not modify either increased lipid peroxidation or diminution of the natural antioxidant defence system (inferred by catalase activity) induced by p-dimethylaminoazobenzene. In conclusion, although cimetidine treatment partially prevented and reversed cytochrome P450 induction, and alteration on haem metabolism provoked by p-dimethylaminoazobenzene AB, it did not reverse liver damage or lipid peroxidation. These results further support our hypothesis on the necessary existence of a multiple biochemical pathway disturbance for the onset of hepatocarcinogenesis initiation

Defects in muscarinic receptor-coupled signal transduction in isolated parotid gland cells after in vivo irradiation: evidence for a non-DNA target of radiation

Radiation-induced dysfunction of normal tissue, an unwanted side effect of radiotherapeutic treatment of cancer, is usually considered to be caused by impaired loss of cell renewal due to sterilisation of stem cells. This implies that the onset of normal tissue damage is usually determined by tissue turnover rate. Salivary glands are a clear exception to this rule: they have slow turnover rates (>60 days), yet develop radiation-induced dysfunction within hours to days. We showed that this could not be explained by a hypersensitivity to radiation-induced apoptosis or necrosis of the differentiated cells. In fact, salivary cells are still capable of amylase secretion shortly after irradiation while at the same time water secretion seems specifically and severely impaired. Here, we demonstrate that salivary gland cells isolated after in vivo irradiation are impaired in their ability to mobilise calcium from intracellular stores (Ca2+i), the driving force for water secretion, after exposure to muscarinic acetylcholine receptor agonists. Using radioligand-receptor-binding assays it is shown that radiation caused no changes in receptor density, receptor affinity nor in receptor-G-protein coupling. However, muscarinic acetylcholine agonist-induced activation of protein kinase C alpha (PKCα), measured as translocation to the plasma membrane, was severely affected in irradiated cells. Also, the phorbol ester PMA could no longer induce PKCα translocation in irradiated cells. Our data hence indicate that irradiation specifically interferes with PKCα association with membranes, leading to impairment of intracellular signalling. To the best of our knowledge, these data for the first time suggest that, the cells' capacity to respond to a receptor agonist is impaired after irradiation

The Importance of pH in Regulating the Function of the Fasciola hepatica Cathepsin L1 Cysteine Protease

The helminth parasite Fasciola hepatica secretes cathepsin L cysteine proteases to invade its host, migrate through tissues and digest haemoglobin, its main source of amino acids. Here we investigated the importance of pH in regulating the activity and functions of the major cathepsin L protease FheCL1. The slightly acidic pH of the parasite gut facilitates the auto-catalytic activation of FheCL1 from its inactive proFheCL1 zymogen; this process was ∼40-fold faster at pH 4.5 than at pH 7.0. Active mature FheCL1 is very stable at acidic and neutral conditions (the enzyme retained ∼45% activity when incubated at 37°C and pH 4.5 for 10 days) and displayed a broad pH range for activity peptide substrates and the protein ovalbumin, peaking between pH 5.5 and pH 7.0. This pH profile likely reflects the need for FheCL1 to function both in the parasite gut and in the host tissues. FheCL1, however, could not cleave its natural substrate Hb in the pH range pH 5.5 and pH 7.0; digestion occurred only at pH≤4.5, which coincided with pH-induced dissociation of the Hb tetramer. Our studies indicate that the acidic pH of the parasite relaxes the Hb structure, making it susceptible to proteolysis by FheCL1. This process is enhanced by glutathione (GSH), the main reducing agent contained in red blood cells. Using mass spectrometry, we show that FheCL1 can degrade Hb to small peptides, predominantly of 4–14 residues, but cannot release free amino acids. Therefore, we suggest that Hb degradation is not completed in the gut lumen but that the resulting peptides are absorbed by the gut epithelial cells for further processing by intracellular di- and amino-peptidases to free amino acids that are distributed through the parasite tissue for protein anabolism