Characterizing the Arabidopsis frd3 Mutant Through an Activation Tagging Screen [abstract]

Abstract only availableFaculty Mentor: Elizabeth Rogers, Biochemistry/Nutritional SciencesIron is an essential element present in many common proteins, and is crucial in a number of metabolic pathways. This role is evident in the multiple disorders due to iron deficiency. Anemia, caused by iron deficiency, is the most common nutritional disorder affecting the world's population. As most people throughout the world depend primarily on plants for their nutritional needs, one way of reducing this problem will be to enhance the bioavailable iron content of plants. A better understanding of how plants acquire, transport and store iron is needed before this goal can be achieved. The Arabidopsis frd3 mutant constitutively activates its iron uptake mechanisms, resulting in an over accumulation of iron and other metals. This iron is however mislocalized and never enters leaf cells where it is ultimately required. Recent work has suggested that the FRD3 protein transports citrate into the root vasculature which is necessary for the correct localization of iron throughout the plant. One way to learn more about the FRD3 protein, and about iron homeostasis in plants, is through an activation tagging screen looking for suppressors of the frd3 phenotype. Briefly, the activation tagging construct has been transformed into frd3 plants using the established agrobacterium floral dip method. Suppressor mutants have been selected using a ferric chelate reductase assay. Putative mutants have been transferred to soil, and are currently growing to produce seed in order to re-analyze the next generation. After mutant confirmation, TAIL-PCR will be used to identify the activated gene. Additional mutant characterization will also be carried out at this stage. At least three classes of genes could be identified through this screen: (1) other citrate effluxers that will perform the same function as FRD3, (2) repressors of FRO2, the root ferric chelate reductase or (3) transporters that would facilitate movement of iron into leaf cells. The discovery and further characterization of these genes would greatly facilitate our understanding of iron nutrition in plants.F21C Summer Fellowshi

Determination Of Electophysiological Properties Of Human Leukocyte Subpopulations Using Lab-On-Chip Device

Prinsip dielectrophoresis (DEP) adalah berdasarkan kepada polarisasi dan pergerakan bioparticles dalam medan elektrik gunaan. Perbezaan populasi sel disebabkan oleh daya DEP boleh diplotkan sebagai spektrum DEP The principle of dielectrophoresis (DEP) is based on the polarization and bioparticles movement in applied electric fields. The differentiation of cell population due to DEP force can be plotted in the DEP spectru

On the Compression of Recurrent Neural Networks with an Application to LVCSR acoustic modeling for Embedded Speech Recognition

We study the problem of compressing recurrent neural networks (RNNs). In particular, we focus on the compression of RNN acoustic models, which are motivated by the goal of building compact and accurate speech recognition systems which can be run efficiently on mobile devices. In this work, we present a technique for general recurrent model compression that jointly compresses both recurrent and non-recurrent inter-layer weight matrices. We find that the proposed technique allows us to reduce the size of our Long Short-Term Memory (LSTM) acoustic model to a third of its original size with negligible loss in accuracy.Comment: Accepted in ICASSP 201

Characterizing the Arabidopsis frd3 mutant through an activation tagging screen [abstract]

Abstract only availableIron is an essential element present in many common proteins, and is crucial in many metabolic pathways. This role is evident in the disorders due to iron deficiency. Anemia, caused by iron deficiency, is the most common nutritional disorder affecting the world's population. As most people depend primarily on plants for their nutritional needs, one way of reducing this problem will be to enhance the bioavailable iron content of plants. A better understanding of how plants acquire, transport and store iron is needed before this goal can be achieved. The Arabidopsis frd3 mutant constitutively activates its iron uptake mechanisms, resulting in an over accumulation of iron and other metals. However iron is mislocalized and never enters leaf cells where it is ultimately required. Recent work has suggested that the FRD3 protein transports citrate into the root vasculature which is necessary for the correct localization of iron throughout the plant. One way to learn more about the FRD3 protein, and about iron homeostasis in plants, is through an activation tagging screen looking for suppressors of the frd3 phenotype. Briefly, the activation tagging construct has been transformed into frd3 plants using the established agrobacterium floral dip method. Suppressor mutants have been selected using ferric chelate reductase assay. Putative mutants have been transferred to soil, and three generations have been screened. After confirmation, TAIL-PCR will be used to identify activated genes. Additional mutant characterization will be carried out at this stage. At least three classes of genes could be identified through this screen: (1) other citrate effluxers that will perform the same function as FRD3, (2) repressors of FRO2, the root ferric chelate reductase or (3) transporters that would facilitate movement of iron into leaf cells. Discovery and further characterization of these genes would greatly facilitate our understanding of iron nutrition in plants.MU Monsanto Undergraduate Research Fellowshi