Splitting methods for constrained diffusion-reaction systems

We consider Lie and Strang splitting for the time integration of constrained partial differential equations with a nonlinear reaction term. Since such systems are known to be sensitive with respect to perturbations, the splitting procedure seems promising as we can treat the nonlinearity separately. This has some computational advantages, since we only have to solve a linear constrained system and a nonlinear ODE. However, Strang splitting suffers from order reduction which limits its efficiency. This is caused by the fact that the nonlinear subsystem produces inconsistent initial values for the constrained subsystem. The incorporation of an additional correction term resolves this problem without increasing the computational cost. Numerical examples including a coupled mechanical system illustrate the proven convergence results

XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis

BACKGROUND: Research using the model system Xenopus laevis has provided critical insights into the mechanisms of early vertebrate development and cell biology. Large scale sequencing efforts have provided an increasingly important resource for researchers. To provide full advantage of the available sequence, we have analyzed 350,468 Xenopus laevis Expressed Sequence Tags (ESTs) both to identify full length protein encoding sequences and to develop a unique database system to support comparative approaches between X. laevis and other model systems. DESCRIPTION: Using a suffix array based clustering approach, we have identified 25,971 clusters and 40,877 singleton sequences. Generation of a consensus sequence for each cluster resulted in 31,353 tentative contig and 4,801 singleton sequences. Using both BLASTX and FASTY comparison to five model organisms and the NR protein database, more than 15,000 sequences are predicted to encode full length proteins and these have been matched to publicly available IMAGE clones when available. Each sequence has been compared to the KOG database and ~67% of the sequences have been assigned a putative functional category. Based on sequence homology to mouse and human, putative GO annotations have been determined. CONCLUSION: The results of the analysis have been stored in a publicly available database XenDB . A unique capability of the database is the ability to batch upload cross species queries to identify potential Xenopus homologues and their associated full length clones. Examples are provided including mapping of microarray results and application of 'in silico' analysis. The ability to quickly translate the results of various species into 'Xenopus-centric' information should greatly enhance comparative embryological approaches. Supplementary material can be found at

Cognitive control: componential or emergent?

The past twenty-five years have witnessed an increasing awareness of the importance of cognitive control in the regulation of complex behavior. It now sits alongside attention, memory, language and thinking as a distinct domain within cognitive psychology. At the same time it permeates each of these sibling domains. This paper reviews recent work on cognitive control in an attempt to provide a context for the fundamental question addressed within this Topic: is cognitive control to be understood as resulting from the interaction of multiple distinct control processes or are the phenomena of cognitive control emergent

Metabolic and Homeostatic Changes in Seizures and Acquired Epilepsy-Mitochondria, Calcium Dynamics and Reactive Oxygen Species

Acquired epilepsies can arise as a consequence of brain injury and result in unprovoked seizures that emerge after a latent period of epileptogenesis. These epilepsies pose a major challenge to clinicians as they are present in the majority of patients seen in a common outpatient epilepsy clinic and are prone to pharmacoresistance, highlighting an unmet need for new treatment strategies. Metabolic and homeostatic changes are closely linked to seizures and epilepsy, although, surprisingly, no potential treatment targets to date have been translated into clinical practice. We summarize here the current knowledge about metabolic and homeostatic changes in seizures and acquired epilepsy, maintaining a particular focus on mitochondria, calcium dynamics, reactive oxygen species and key regulators of cellular metabolism such as the Nrf2 pathway. Finally, we highlight research gaps that will need to be addressed in the future which may help to translate these findings into clinical practice

Endurance Capacities in Professional Soccer Players: Are Performance Profiles Position Specific?

The aim of this study was to investigate position-specific endurance performance of soccer players. 136 professional players competing in the 1st and 2nd division in Germany were divided into the positional groups goalkeepers (GK), central defenders (CD), wingers (WI), central midfielders (CM), and forwards (FW). All players performed an incremental treadmill test with blood lactate sampling until exhaustion with the following endurance parameters being obtained: Fixed aerobic threshold (v2mmol/l), fixed anaerobic threshold (v4mmol/l), individual aerobic threshold (vLT), individual anaerobic threshold (vIAT), and maximum velocity (vmax). Results revealed significant differences between GK and all outfield playing positions for all endurance parameters (p ≤ 0.03; ES 0.87–2.19). No significant differences among outfield playing positions were evident for any of the parameters. However, trends were found in favor of the CM compared to the WI (p = 0.11; ES = 0.68) and the FW (p = 0.06; ES = 0.47) relating to vLT as well as in favor of the CM compared to the WI (p = 0.10; ES = 0.56) relating to vIAT. Findings suggest that goalkeepers possess the lowest endurance capacity compared to other playing positions. While outfield players in general showed similar endurance performance, CM seem to possess the highest aerobic capacity of all positions as indicated by all lactate-based thresholds, however, with only small to moderate ES. These findings could lead one to question the appropriateness of current endurance training regimes to prepare all players adequately for their positional match-running demands. Indeed, endurance training of players should be specific to their match-running demands. However, it remains unknown to what extent these demands are position or player specific

Constraining New Physics with a Positive or Negative Signal of Neutrino-less Double Beta Decay

We investigate numerically how accurately one could constrain the strengths of different short-range contributions to neutrino-less double beta decay in effective field theory. Depending on the outcome of near-future experiments yielding information on the neutrino masses, the corresponding bounds or estimates can be stronger or weaker. A particularly interesting case, resulting in strong bounds, would be a positive signal of neutrino-less double beta decay that is consistent with complementary information from neutrino oscillation experiments, kinematical determinations of the neutrino mass, and measurements of the sum of light neutrino masses from cosmological observations. The keys to more robust bounds are improvements of the knowledge of the nuclear physics involved and a better experimental accuracy.Comment: 23 pages, 3 figures. Minor changes. Matches version published in JHE

Agricultura orgânica: características básicas do seu produtor.

A agricultura orgânica é ainda pouco expressiva no Brasil. Sua relevância é, no entanto, crescente, seguindo tendência observada em outros países, em especial na Europa. Este estudo analisa as características básicas do produtor de produtos orgânicos, contribuindo para preencher uma lacuna existente na literatura de economia rural. Utilizando informações primárias sobre agricultores orgânicos da região próxima à cidade de Curitiba, Paraná, identificamos as suas características pessoais e econômicas, por meio de estatística descritiva, análise de correlação e regressão linear múltipla. Os produtores foram divididos em dois grupos: o primeiro com aqueles que ainda estão em conversão para a agricultura orgânica e o segundo grupo composto por produtores orgânicos que já obtiveram a certificação de seus produtos. Os resultados obtidos indicam que alta participação de capital próprio no financiamento da produção e elevado nível de escolaridade são duas das características mais marcantes dos produtores rurais orgânicos paranaenses. Outras características que influenciam o resultado líquido da atividade são a disponibilidade de mão de obra e a integração de atividades agrícolas, pecuárias e florestais

Spectral and transport properties of doped Mott-Hubbard systems with incommensurate magnetic order

We present spectral and optical properties of the Hubbard model on a two-dimensional square lattice using a generalization of dynamical mean-field theory to magnetic states in finite dimension. The self-energy includes the effect of spin fluctuations and screening of the Coulomb interaction due to particle-particle scattering. At half-filling the quasiparticles reduce the width of the Mott-Hubbard `gap' and have dispersions and spectral weights that agree remarkably well with quantum Monte Carlo and exact diagonalization calculations. Away from half-filling we consider incommensurate magnetic order with a varying local spin direction, and derive the photoemission and optical spectra. The incommensurate magnetic order leads to a pseudogap which opens at the Fermi energy and coexists with a large Mott-Hubbard gap. The quasiparticle states survive in the doped systems, but their dispersion is modified with the doping and a rigid band picture does not apply. Spectral weight in the optical conductivity is transferred to lower energies and the Drude weight increases linearly with increasing doping. We show that incommensurate magnetic order leads also to mid-gap states in the optical spectra and to decreased scattering rates in the transport processes, in qualitative agreement with the experimental observations in doped systems. The gradual disappearence of the spiral magnetic order and the vanishing pseudogap with increasing temperature is found to be responsible for the linear resistivity. We discuss the possible reasons why these results may only partially explain the features observed in the optical spectra of high temperature superconductors.Comment: 22 pages, 18 figure

ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries.

This review summarizes the last decade of work by the ENIGMA (Enhancing NeuroImaging Genetics through Meta Analysis) Consortium, a global alliance of over 1400 scientists across 43 countries, studying the human brain in health and disease. Building on large-scale genetic studies that discovered the first robustly replicated genetic loci associated with brain metrics, ENIGMA has diversified into over 50 working groups (WGs), pooling worldwide data and expertise to answer fundamental questions in neuroscience, psychiatry, neurology, and genetics. Most ENIGMA WGs focus on specific psychiatric and neurological conditions, other WGs study normal variation due to sex and gender differences, or development and aging; still other WGs develop methodological pipelines and tools to facilitate harmonized analyses of "big data" (i.e., genetic and epigenetic data, multimodal MRI, and electroencephalography data). These international efforts have yielded the largest neuroimaging studies to date in schizophrenia, bipolar disorder, major depressive disorder, post-traumatic stress disorder, substance use disorders, obsessive-compulsive disorder, attention-deficit/hyperactivity disorder, autism spectrum disorders, epilepsy, and 22q11.2 deletion syndrome. More recent ENIGMA WGs have formed to study anxiety disorders, suicidal thoughts and behavior, sleep and insomnia, eating disorders, irritability, brain injury, antisocial personality and conduct disorder, and dissociative identity disorder. Here, we summarize the first decade of ENIGMA's activities and ongoing projects, and describe the successes and challenges encountered along the way. We highlight the advantages of collaborative large-scale coordinated data analyses for testing reproducibility and robustness of findings, offering the opportunity to identify brain systems involved in clinical syndromes across diverse samples and associated genetic, environmental, demographic, cognitive, and psychosocial factors