Performance Evaluation for Clustering Algorithms in Object-Oriented Database Systems

International audienceIt is widely acknowledged that good object clustering is critical to the performance of object-oriented databases. However, object clustering always involves some kind of overhead for the system. The aim of this paper is to propose a modelling methodology in order to evaluate the performances of different clustering policies. This methodology has been used to compare the performances of three clustering algorithms found in the literature (Cactis, CK and ORION) that we considered representative of the current research in the field of object clustering. The actual performance evaluation was performed using simulation. Simulation experiments we performed showed that the Cactis algorithm is better than the ORION algorithm and that the CK algorithm totally outperforms both other algorithms in terms of response time and clustering overhead

Transfer Functions and Penetrations of Five Differential Mobility Analyzers for Sub-2 nm Particle Classification

The transfer functions and penetrations of five differential mobility analyzers (DMAs) for sub-2 nm particle classification were evaluated in this study. These DMAs include the TSI nanoDMA, the Caltech radial DMA (RDMA) and nanoRDMA, the Grimm nanoDMA, and the Karlsruhe-Vienna DMA. Measurements were done using tetra-alkyl ammonium ion standards with mobility diameters of 1.16, 1.47, and 1.70 nm. These monomobile ions were generated by electrospray followed by high resolution mobility classification. Measurements were focused at an aerosol-to-sheath flow ratio of 0.1. A data inversion routine was developed to obtain the true transfer function for each test DMA, and these measured transfer functions were compared with theory. DMA penetration efficiencies were also measured. An approximate model for diffusional deposition, based on the modified Gormley and Kennedy equation using an effective length, is given for each test DMA. These results quantitatively characterize the performance of the test DMAs in classifying sub-2 nm particles and can be readily used for DMA data inversion

Genetic Characterization of the Tick-Borne Orbiviruses

The International Committee for Taxonomy of Viruses (ICTV) recognizes four species of tick-borne orbiviruses (TBOs): Chenuda virus, Chobar Gorge virus, Wad Medani virus and Great Island virus (genus Orbivirus, family Reoviridae). Nucleotide (nt) and amino acid (aa) sequence comparisons provide a basis for orbivirus detection and classification, however full genome sequence data were only available for the Great Island virus species. We report representative genome-sequences for the three other TBO species (virus isolates: Chenuda virus (CNUV); Chobar Gorge virus (CGV) and Wad Medani virus (WMV)). Phylogenetic comparisons show that TBOs cluster separately from insect-borne orbiviruses (IBOs). CNUV, CGV, WMV and GIV share low level aa/nt identities with other orbiviruses, in 'conserved' Pol, T2 and T13 proteins/genes, identifying them as four distinct virus-species. The TBO genome segment encoding cell attachment, outer capsid protein 1 (OC1), is approximately half the size of the equivalent segment from insect-borne orbiviruses, helping to explain why tick-borne orbiviruses have a ~1 kb smaller genome

Characterization of three new condensation particle counters for sub-3 nm particle detection during the Helsinki CPC workshop : the ADI versatile water CPC, TSI 3777 nano enhancer and boosted TSI 3010

In this study we characterized the performance of three new particle counters able to detect particles smaller than 3 nm during the Helsinki condensation particle counter (CPC) workshop in summer 2016: the Aerosol Dynamics Inc. (ADI; Berkeley, USA) versatile water condensation particle counter (vWCPC), TSI 3777 nano enhancer (TSI Inc., Shoreview, USA) and modified and boosted TSI 3010-type CPC from Universite Blaise Pascal called a B3010. The performance of all CPCs was first measured with charged tungsten oxide test particles at temperature settings which resulted in supersaturation low enough to not detect any ions produced by a radioactive source. Due to similar measured detection efficiencies, additional comparison between the 3777 and vWCPC were conducted using electrically neutral tungsten oxide test particles and with positively charged tetradodecylammonium bromide. Furthermore, the detection efficiencies of the 3777 and vWCPC were measured with boosted temperature settings yielding supersaturation which was at the onset of homogeneous nucleation for the 3777 or confined within the range of liquid water for the ADI vWCPC. Finally, CPC-specific tests were conducted to probe the response of the 3777 to various inlet flow relative humidities, of the B3010 to various inlet flow rates and of the vWCPC to various particle concentrations. For the 3777 and vWCPC the measured 50% detection diameters (d50s) were in the range of 1.3-2.4 nm for the tungsten oxide particles, depending on the particle charging state and CPC temperature settings, between 2.5 and 3.3 nm for the organic test aerosol, and in the range of 3.2-3.4 nm for tungsten oxide for the B3010.Peer reviewe

Full Genome Characterization of the Culicoides-Borne Marsupial Orbiviruses: Wallal Virus, Mudjinbarry Virus and Warrego Viruses

Viruses belonging to the species Wallal virus and Warrego virus of the genus Orbivirus were identified as causative agents of blindness in marsupials in Australia during 1994/5. Recent comparisons of nucleotide (nt) and amino acid (aa) sequences have provided a basis for the grouping and classification of orbivirus isolates. However, full-genome sequence data are not available for representatives of all Orbivirus species. We report full-genome sequence data for three additional orbiviruses: Wallal virus (WALV); Mudjinabarry virus (MUDV) and Warrego virus (WARV). Comparisons of conserved polymerase (Pol), sub-core-shell 'T2' and core-surface 'T13' proteins show that these viruses group with other Culicoides borne orbiviruses, clustering with Eubenangee virus (EUBV), another orbivirus infecting marsupials. WARV shares <70% aa identity in all three conserved proteins (Pol, T2 and T13) with other orbiviruses, consistent with its classification within a distinct Orbivirus species. Although WALV and MUDV share <72.86%/67.93% aa/nt identity with other orbiviruses in Pol, T2 and T13, they share >99%/90% aa/nt identities with each other (consistent with membership of the same virus species - Wallal virus). However, WALV and MUDV share <68% aa identity in their larger outer capsid protein VP2(OC1), consistent with membership of different serotypes within the species - WALV-1 and WALV-2 respectively

Dual infection with bluetongue virus serotypes and first time detection of serotype 5 in India

Bluetongue is endemic in India and has been reported from most Indian states. Of late, the clinical disease is most frequently seen in the states of Andhra Pradesh, Telangana (erstwhile Andhra Pradesh state), Tamil Nadu and Karnataka. Our analysis of diagnostic samples from bluetongue outbreaks during 2010–2011 from the state of Karnataka identified bluetongue virus (BTV) serotype 5 (BTV-5) for the first time in India. One of the diagnostic samples (CH1) and subsequent virus isolate (IND2010/02) contained both BTV-2 and BTV-5. Segment 2 (seg-2) sequence data (400 bp: nucleotides 2538–2921) for IND2010/02-BTV5, showed 94.3% nucleotide identity to BTV-5 from South Africa (Accession no. AJ585126), confirming the virus serotype and also indicating that Seg-2 was derived from a Western topotype, which is in contrast to serotype 2, that belongs to an Eastern topotype. BTV-5 has been recently reported from Africa, China, French islands and the Americas. Although the exact source of the Indian BTV-5 isolate is still to be confirmed, recent identification of additional exotic serotypes in India is of real concern and might add to the severity of the disease seen in these outbreaks

Nanoparticle manufacture ambient air chemical and physical survey as a tool for accidental and chronic risk assessment

Nowadays, nanotechnology lets foresee many opportunities and benefits for new materials with significantly improved properties as well as revolutionary applications in large industrial flelds. Analysts have estimated that the size of the market was 900 million Euro in 2005 and will be 11 billion Euro in 2010. However, nanomaterial industrial stakeholders are currently encountering potential problems with hazard control in their production plants. Release of nanoparticles in air can lead to violent chemical reactions and even explosions because of their small size and energetic properties, and hence high chemical reactivity. Another major safery concern is the impact of manufacturing nanoparticles on the environment and more specifically on the health of workers and of neighbouring populations. Thus, a key issue consists of controlling the release of nanoparticles with chemical or physical toxicological impacts under the ambient background

Erosion éolienne dans les régions arides et semi-arides africaines : processus physiques, métrologie et techniques de lutte

Les régions arides du sud de la Tunisie sont des zones naturellement très sensibles à l'érosion éolienne. Non seulement les précipitations dans ces régions sont faibles (inférieures à 200 mm), mais les sols sont fins, sableux et peu profonds, c'est-à-dire facilement érodables par le vent. L'utilisation de nouvelles techniques agricoles à la place des techniques traditionnelles a conduit à une augmentation de l'érosion éolienne dans ces régions. Par exemple, l'augmentation croissante de l'utilisation de la déchaumeuse à disques a eu d'importantes conséquences sur la dégradation des champs en modifiant la structure des sols et les caractéristiques de leur surface. Le présent travail de modélisation est centré sur la quantification de la déflation éolienne à l'échelle du sud tunisien en vue de déterminer en particulier les zones les plus sensibles à ce phénomène pour des objectifs de diagnostic et de stratégie de lutte efficace contre l'érosion éolienne. Les flux d'érosion éolienne sur le sud de la Tunisie ont été simulés pour l'année 2008 à une résolution de 10 km x 10 km en prenant en compte le type d'usage des sols et les pratiques agricoles associées à l'aide du modèle d'érosion éolienne Dust Production Model (DPM, Marticorena et Bergametti [1995] ; Alfaro et al. [1998]). Afin de prendre en compte les différents types d'outils agricoles utilisés sur le domaine étudié, les paramétrisations du seuil et du flux d'érosion éolienne en fonction des caractéristiques des billons de labour (hauteur et espacement) développées par Kardous et al. [2005a ; b] ont été intégrées au DPM. [...

Concurrent infection of bluetongue and peste-des-petits-ruminants virus in small ruminants in Haryana State of India

Bluetongue (BT) and peste-des-petits-ruminants (PPR) are major transboundary diseases of small ruminant, which are endemic in India. Testing of bluetongue virus (BTV) and peste-des-petits-ruminants virus (PPRV) from recent outbreaks (2015–2016) in different regions of Haryana State of India revealed that 27.5% of the samples showed the presence of dual infection of BTV and PPRV. Analysis of Seg-2 of BTV (the serotype-determining protein) showed the presence of BTV-12w in several isolates. However, analysis of N gene fragment amplicons showed that viruses belong to lineage IV were most closely related to a pathogenic strain of PPRV from Delhi. This is the first report of co-circulation of PPRV lineage IV and bluetongue virus serotype 12 in the state