General theoretical description of angle-resolved photoemission spectroscopy of van der Waals structures

We develop a general theory to model the angle-resolved photoemission spectroscopy (ARPES) of commensurate and incommensurate van der Waals (vdW) structures, formed by lattice mismatched and/or misaligned stacked layers of two-dimensional materials. The present theory is based on a tight-binding description of the structure and the concept of generalized umklapp processes, going beyond previous descriptions of ARPES in incommensurate vdW structures, which are based on continuous, low-energy models, being limited to structures with small lattice mismatch/misalignment. As applications of the general formalism, we study the ARPES bands and constant energy maps for two structures: twisted bilayer graphene and twisted bilayer MoS$_{2}$. The present theory should be useful in correctly interpreting experimental results of ARPES of vdW structures and other systems displaying competition between different periodicities, such as two-dimensional materials weakly coupled to a substrate and materials with density wave phases.Comment: 17 pages, 7 figure

A method for classifying mental tasks in the space of EEG transforms

In this article we describe a new method for supervised classification of EEG signals. This method applies to the power spectrum density data and assigns class-dependent information weights to individual pixels, so that the decision is defined by the summary weights of the most informative pixel features. We experimentally analyze several versions of the approach. The informative features appear to be rather similar among different individuals, thus supporting the view that there are subject independent general brain patterns for the same mental task

Hamiltonian formulation of nonAbelian noncommutative gauge theories

We implement the Hamiltonian treatment of a nonAbelian noncommutative gauge theory, considering with some detail the algebraic structure of the noncommutative symmetry group. The first class constraints and Hamiltonian are obtained and their algebra derived, as well as the form of the gauge invariance they impose on the first order action.Comment: enlarged version, 7 pages, RevTe

Transcriptomic effects of the non-steroidal anti-inflammatory drug Ibuprofen in the marine bivalve Mytilus galloprovincialis Lam

The transcriptomic effects of Ibuprofen (IBU) in the digestive gland tissue of Mytilus galloprovincialis Lam. specimens exposed at low environmental concentrations (250 ng L-1) are presented. Using a 1.7 K feature cDNA microarray along with linear models and empirical Bayes statistical methods 225 differentially expressed genes were identified in mussels treated with IBU across a 15-day period. Transcriptional dynamics were typical of an adaptive response with a peak of gene expression change at day 7 (177 features, representing about 11% of sequences available for analysis) and an almost full recovery at the end of the exposure period. Functional genomics by means of Gene Ontology term analysis unraveled typical mussel stress responses i.e. aminoglycan (chitin) metabolic processes but also more specific effects such as the regulation of NF-kappa B transcription factor activity. (C) 2016 Elsevier Ltd. All rights reserved

Identification of a high-velocity compact nebular filament 2.2 arcsec south of the Galactic Centre

The central parsec of the Milky Way is a very special region of our Galaxy; it contains the supermassive black hole associated with Sgr A* as well as a significant number of early-type stars and a complex structure of streamers of neutral and ionized gas, within two parsecs from the centre, representing a unique laboratory. We report the identification of a high velocity compact nebular filament 2.2 arcsec south of Sgr A*. The structure extends over ~1 arcsec and presents a strong velocity gradient of ~200 km s^{-1} arcsec^{-1}. The peak of maximum emission, seen in [Fe III] and He I lines, is located at d{\alpha} = +0.20 +/- 0.06 arcsec and d{\delta} = -2.20 +/- 0.06 arcsec with respect to Sgr A*. This position is near the star IRS 33N. The velocity at the emission peak is Vr = -267 km s^{-1}. The filament has a position angle of PA = 115{\degr} +/- 10{\degr}, similar to that of the Bar and of the Eastern Arm at that position. The peak position is located 0.7 arcsec north of the binary X-ray and radio transient CXOGX J174540.0-290031, a low-mass X-ray binary with an orbital period of 7.9 hr. The [Fe III] line emission is strong in the filament and its vicinity. These lines are probably produced by shock heating but we cannot exclude some X-ray photoionization from the low-mass X-ray binary. Although we cannot rule out the idea of a compact nebular jet, we interpret this filament as a possible shock between the Northern and the Eastern Arm or between the Northern Arm and the mini-spiral "Bar".Comment: 7 pages, 4 figures, published online in MNRA

Characterization of a rare analphoid supernumerary marker chromosome in mosaic

Abstract publicado em: Chromosome Research. 2015;23(Suppl 1):67-8. doi:10.1007/s10577-015-9476-6Analphoid supernumerary marker chromosomes (SMCs) are a rare subclass of SMCs C-band-negative and devoid of alpha-satellite DNA. These marker chromosomes cannot be identified unambiguously by conventional banding techniques alone being necessary to apply molecular cytogenetic methods in favour of a detailed characterization. In this work we report an analphoid SMC involving the terminal long arm of chromosome 7, in 9 years-old boy with several dysmorphic features and severe development delay. Cytogenetic analysis revealed a mosaic karyotype with the presence of an extra SMC, de novo, in 20 % of lymphocytes and 73 % of fibroblast cells. FISH analysis with alpha-satellite probes for all chromosomes, whole chromosome painting probe for chromosome 7, and D7S427 and TelVysion 7q probes, allowed establishing the origin of the SMC as an analphoidmarker resulting of an invdup rearrangement of 7q36-qter region. Affimetrix CytoScan HD microarray analysis, redefined the SMC to arr[hg19] 7q35(143696249-159119707)×2~3, which correspond to a gain of 15.42 Mb and encloses 67 OMIM genes, 16 of which are associated to disease. This result, combined with detailed clinical description, will provide an important means for better genotype-phenotype correlation and a more suitable genetic counselling to the patient and his parents, despite the additional difficulty resulting from being a mosaic (expression varies in different tissues). Analphoid SMCs derived from chromosome 7 are very rare, with only three cases reported so far. With this case we hope contribute to a better understanding of this type of chromosome rearrangements which are difficult for genetic counselling

Topological strong field physics on sub-laser cycle time scale

Sub-laser cycle time scale of electronic response to strong laser fields enables attosecond dynamical imaging in atoms, molecules and solids. Optical tunneling and high harmonic generation are the hallmarks of attosecond imaging in optical domain, including imaging of phase transitions in solids. Topological phase transition yields a state of matter intimately linked with electron dynamics, as manifested via the chiral edge currents in topological insulators. Does topological state of matter leave its mark on optical tunneling and sub-cycle electronic response? We identify distinct topological effects on the directionality and the attosecond timing of currents arising during electron injection into conduction bands. We show that electrons tunnel across the band gap differently in trivial and topological phases, for the same band structure, and identify the key role of the Berry curvature in this process. These effects map onto topologically-dependent attosecond delays in high harmonic emission and the helicities of the emitted harmonics, which can record the phase diagram of the system and its topological invariants. Thus, the topological state of the system controls its attosecond, highly non-equilibrium electronic response to strong low-frequency laser fields, in bulk. Our findings create new roadmaps in studies of topological systems, building on ubiquitous properties of sub-laser cycle strong field response - a unique mark of attosecond science