Cell-free prediction of protein expression costs for growing cells

Translating heterologous proteins places significant burden on host cells, consuming expression resources leading to slower cell growth and productivity. Yet predicting the cost of protein production for any given gene is a major challenge, as multiple processes and factors combine to determine translation efficiency. To enable prediction of the cost of gene expression in bacteria, we describe here a standard cell-free lysate assay that provides a relative measure of resource consumption when a protein coding sequence is expressed. These lysate measurements can then be used with a computational model of translation to predict the in vivo burden placed on growing E. coli cells for a variety of proteins of different functions and lengths. Using this approach, we can predict the burden of expressing multigene operons of different designs and differentiate between the fraction of burden related to gene expression compared to action of a metabolic pathway

Spitzer IRS Observations of the XA Region in the Cygnus Loop Supernova Remnant

We report on spectra of two positions in the XA region of the Cygnus Loop supernova remnant obtained with the InfraRed Spectrograph on the Spitzer Space Telescope. The spectra span the 10-35 micron wavelength range, which contains a number of collisionally excited forbidden lines. These data are supplemented by optical spectra obtained at the Whipple Observatory and an archival UV spectrum from the International Ultraviolet Explorer. Coverage from the UV through the IR provides tests of shock wave models and tight constraints on model parameters. Only lines from high ionization species are detected in the spectrum of a filament on the edge of the remnant. The filament traces a 180 km/s shock that has just begun to cool, and the oxygen to neon abundance ratio lies in the normal range found for Galactic H II regions. Lines from both high and low ionization species are detected in the spectrum of the cusp of a shock-cloud interaction, which lies within the remnant boundary. The spectrum of the cusp region is matched by a shock of about 150 km/s that has cooled and begun to recombine. The post-shock region has a swept-up column density of about 1.3E18 cm^-2, and the gas has reached a temperature of 7000 to 8000 K. The spectrum of the Cusp indicates that roughly half of the refractory silicon and iron atoms have been liberated from the grains. Dust emission is not detected at either position.Comment: 35 pages, including 9 figures. Accepted for publication in the Astrophysical Journa

Data analysis of gravitational-wave signals from spinning neutron stars. V. A narrow-band all-sky search

We present theory and algorithms to perform an all-sky coherent search for periodic signals of gravitational waves in narrow-band data of a detector. Our search is based on a statistic, commonly called the $\mathcal{F}$-statistic, derived from the maximum-likelihood principle in Paper I of this series. We briefly review the response of a ground-based detector to the gravitational-wave signal from a rotating neuron star and the derivation of the $\mathcal{F}$-statistic. We present several algorithms to calculate efficiently this statistic. In particular our algorithms are such that one can take advantage of the speed of fast Fourier transform (FFT) in calculation of the $\mathcal{F}$-statistic. We construct a grid in the parameter space such that the nodes of the grid coincide with the Fourier frequencies. We present interpolation methods that approximately convert the two integrals in the $\mathcal{F}$-statistic into Fourier transforms so that the FFT algorithm can be applied in their evaluation. We have implemented our methods and algorithms into computer codes and we present results of the Monte Carlo simulations performed to test these codes.Comment: REVTeX, 20 pages, 8 figure

Experimental observation of magnetic bobbers for a new concept of magnetic solid-state memory

The use of chiral skyrmions, which are nanoscale vortex-like spin textures, as movable data bit carriers forms the basis of a recently proposed concept for magnetic solid-state memory. In this concept, skyrmions are considered to be unique localized spin textures, which are used to encode data through the quantization of different distances between identical skyrmions on a guiding nanostripe. However, the conservation of distances between highly mobile and interacting skyrmions is difficult to implement in practice. Here, we report the direct observation of another type of theoretically-predicted localized magnetic state, which is referred to as a chiral bobber (ChB), using quantitative off-axis electron holography. We show that ChBs can coexist together with skyrmions. Our results suggest a novel approach for data encoding, whereby a stream of binary data representing a sequence of ones and zeros can be encoded via a sequence of skyrmions and bobbers. The need to maintain defined distances between data bit carriers is then not required. The proposed concept of data encoding promises to expedite the realization of a new generation of magnetic solid-state memory

Observations of X-rays and Thermal Dust Emission from the Supernova Remnant Kes 75

We present Spitzer Space Telescope and Chandra X-ray Observatory observations of the composite Galactic supernova remnant Kes 75 (G29.7-0.3). We use the detected flux at 24 microns and hot gas parameters from fitting spectra from new, deep X-ray observations to constrain models of dust emission, obtaining a dust-to-gas mass ratio M_dust/M_gas ~0.001. We find that a two-component thermal model, nominally representing shocked swept-up interstellar or circumstellar material and reverse-shocked ejecta, adequately fits the X-ray spectrum, albeit with somewhat high implied densities for both components. We surmise that this model implies a Wolf-Rayet progenitor for the remnant. We also present infrared flux upper limits for the central pulsar wind nebula.Comment: 7 pages, 2 tables, 4 figures, uses emulateapj. Accepted for publication in Ap

Constraints on the luminosity of the stellar remnant in SNR1987A

We obtain photometric constraints on the luminosity of the stellar remnant in SNR1987A using XMM-Newton and INTEGRAL data. The upper limit in the 2--10 keV band based on the XMM-Newton data is L<5*10^{34}erg/s. We note, however, that the optical depth of the envelope is still high in the XMM-Newton band, therefore, this upper limit does not constrain the true unabsorbed luminosity of the central source. The optical depth is expected to be small in the hard X-ray band of the IBIS telescope aboard the INTEGRAL observatory, therefore it provides an unobscured look at the stellar remnant. We did not detect statistically significant emission from SN1987A in the 20-60 keV band with the upper limit of L<1.1*10^{36}erg/s. We also obtained an upper limit on the mass of radioactive 44Ti M(44Ti)<10^{-3}Msun.Comment: 5 pages, 3 figures, accepted for publication in Astronomy Letter

An XMM-Newton Study of the Bright, Nearby Supernova Remnant G296.1-0.5

We present a detailed study of the supernova remnant G296.1-0.5, performed using observations with the EPIC and RGS instruments of the XMM-Newton satellite. G296.1-0.5 is a bright remnant that displays an incomplete multiple-shell morphology in both its radio and X-ray images. We use a set of observations towards G296.1-0.5, from three distinct pointings of EPIC, in order to perform a thorough spatial and spectral analysis of this remnant, and hence determine what type of progenitor gave rise to the supernova explosion, and describe the evolutionary state of the SNR. Our XMM-Newton observations establish that the spectral characteristics are consistent across the X-ray bright regions of the object, and are best described by a model of the emission from a nonequilibrium ionization collisional plasma. The study reveals that the emission from the shell is characterized by an excess of N and an underabundance of O, which is typical of wind material from red supergiant (RSG) and Wolf-Rayet (WR) stars. Additionally, we have detected transient X-ray source 2XMMi J115004.8-622442 at the edge of the SNR whose properties suggest that it is the result of stellar flare, and we discuss its nature in more detail.Comment: 10 pages, 7 figures, 3 tables. Accepted for publication in Ap

Gap States in Dilute Magnetic Alloy Superconductors

We study states in the superconducting gap induced by magnetic impurities using self-consistent quantum Monte Carlo with maximum entropy and formally exact analytic continuation methods. The magnetic impurity susceptibility has different characteristics for T_{0} \alt T_{c0} and T_{0} \agt T_{c0} ($T_{0}$: Kondo temperature, $T_{c0}$: superconducting transition temperature) due to the crossover between a doublet and a singlet ground state. We systematically study the location and the weight of the gap states and the gap parameter as a function of $T_{0}/T_{c0}$ and the concentration of the impurities.Comment: 4 pages in ReVTeX including 4 encapsulated Postscript figure