Draft Genome Sequence of Bacillus velezensis CE2, Which Genetically Encodes a Novel Multicomponent Lantibiotic.

Bacillus velezensis CE2 produces potent antimicrobial compound(s). The draft genome sequence of the strain reported here is 4.1 Mb with a G+C content of 46.1%. Whole-genome sequencing revealed that the strain genetically encodes a novel multicomponent lantibiotic, velezensicidin

The First Second of Volcanic Eruptions from the Erebus Volcano Lava Lake, Antarctica—Energies, Pressures, Seismology, and Infrasound

[1] We describe a multiparameter experiment at Erebus volcano, Antarctica, employing Doppler radar, video, acoustic, and seismic observations to estimate the detailed energy budget of large (up to 40 m-diameter) bubble bursts from a persistent phonolite lava lake. These explosions are readily studied from the crater rim at ranges of less than 500 m and present an ideal opportunity to constrain the dynamics and mechanism of magmatic bubble bursts that can drive Strombolian and Hawaiian eruptions. We estimate the energy budget of the first second of a typical Erebus explosion as a function of time and energy type. We constrain gas pressures and forces using an analytic model for the expansion of a gas bubble above a conduit that incorporates conduit geometry and magma and gas parameters. The model, consistent with video and radar observations, invokes a spherical bulging surface with a base diameter equal to that of the lava lake. The model has no ad hoc free parameters, and geometrical calculations predict zenith height, velocity, and acceleration during shell expansion. During explosions, the energy contained in hot overpressured gas bubbles is freed and partitioned into other energy types, where by far the greatest nonthermal energy component is the kinetic and gravitational potential energy of the accelerated magma shell (\u3e109 J). Seismic source energy created by explosions is estimated from radar measurements and is consistent with source energy determined from seismic observations. For the generation of the infrasonic signal, a dual mechanism incorporating a terminally disrupted slug is proposed, which clarifies previous models and provides good fits to observed infrasonic pressures. A new and straightforward method is presented for determining gas volumes from slug explosions at volcanoes from remote infrasound recordings

Evolution of E2 transition strength in deformed hafnium isotopes from new measurements on 172^{172}Hf, 174^{174}Hf, and 176^{176}Hf

The available data for E2 transition strengths in the region between neutron-deficient Hf and Pt isotopes are far from complete. More and precise data are needed to enhance the picture of structure evolution in this region and to test state-of-the-art nuclear models. In a simple model, the maximum collectivity is expected at the middle of the major shell. However, for actual nuclei, this picture may no longer be the case, and one should use a more realistic nuclear-structure model. We address this point by studying the spectroscopy of Hf. We remeasure the 2^+_1 half-lives of 172,174,176Hf, for which there is some disagreement in the literature. The main goal is to measure, for the first time, the half-lives of higher-lying states of the rotational band. The new results are compared to a theoretical calculation for absolute transition strengths. The half-lives were measured using \gamma-\gamma and conversion-electron-\gamma delayed coincidences with the fast timing method. For the determination of half-lives in the picosecond region, the generalized centroid difference method was applied. For the theoretical calculation of the spectroscopic properties, the interacting boson model is employed, whose Hamiltonian is determined based on microscopic energy-density functional calculations. The measured 2^+_1 half-lives disagree with results from earlier \gamma-\gamma fast timing measurements, but are in agreement with data from Coulomb excitation experiments and other methods. Half-lives of the 4^+_1 and 6^+_1 states were measured, as well as a lower limit for the 8^+_1 states. We show the importance of the mass-dependence of effective boson charge in the description of E2 transition rates in chains of nuclei. It encourages further studies of the microscopic origin of this mass dependence. New data on transition rates in nuclei from neighboring isotopic chains could support these studies.Comment: 16 pages, 16 figures, 7 tables; Abstract shortened due to character limi

Impact of the Adipokine Adiponectin and the Hepatokine Fetuin-A on the Development of Type 2 Diabetes: Prospective Cohort- and Cross-Sectional Phenotyping Studies

Background: Among adipokines and hepatokines, adiponectin and fetuin-A were consistently found to predict the incidence of type 2 diabetes, both by regulating insulin sensitivity. Objective: To determine to what extent circulating adiponectin and fetuin-A are independently associated with incident type 2 diabetes in humans, and the major mechanisms involved. Methods: Relationships with incident diabetes were tested in two cohort studies: within the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam study (628 cases) and the Nurses' Health Study (NHS; 470 cases). Relationships with body fat compartments, insulin sensitivity and insulin secretion were studied in the Tübingen Lifestyle Intervention Program (TULIP; N = 358). Results: Circulating adiponectin and fetuin-A, independently of several confounders and of each other, associated with risk of diabetes in EPIC-Potsdam (RR for 1 SD: adiponectin: 0.45 [95% CI 0.37–0.54], fetuin-A: 1.18 [1.05–1.32]) and the NHS (0.51 [0.42–0.62], 1.35 [1.16–1.58]). Obesity measures considerably attenuated the association of adiponectin, but not of fetuin-A. Subjects with low adiponectin and concomitantly high fetuin-A had the highest risk. Whereas both proteins were independently (both p<1.8×10−7) associated with insulin sensitivity, circulating fetuin-A (r = −0.37, p = 0.0004), but not adiponectin, associated with insulin secretion in subjects with impaired glucose tolerance. Conclusions: We provide novel information that adiponectin and fetuin-A independently of each other associate with the diabetes risk. Furthermore, we suggest that they are involved in the development of type 2 diabetes via different mechanisms, possibly by mediating effects of their source tissues, expanded adipose tissue and nonalcoholic fatty liver

Localization of thioredoxin in the rat brain and functional implications

The immunoreactivity for thioredoxin, which catalyzes protein disulfide reductions, has previously been shown to exist in nerve cells and their axons. Here we demonstrate the localization of thioredoxin mRNA as revealed by in situ hybridization in the rat brain. The gene is expressed in nerve cells of a variety of brain regions, for example, the cerebral cortex, the piriform cortex, the medial preoptic area, the CA3/CA4 region of the hippocampal formation, the dentate gyrus, the paraventricular nucleus of the hypothalamus, the arcuate nucleus, the substantia nigra pars compacta, the locus coeruleus, the ependyma of the 4th ventricle, and the epithelial cells of the choroid plexus. This distribution implicates an important function in nerve cell metabolism, especially in regions with high energy demands and indicates a role of the choroid plexus in nerve cell protection from environmental influences. It was found that after mechanical injury induced by partial unilateral hemitransection the thioredoxin mRNA expression is upregulated in the lesioned area and spreads to the cortical hemispheres at the lesioned level. This induction suggests a function of thioredoxin in the regeneration machinery of the brain following mechanical injury and oxidative stress

Structural Disorder Provides Increased Adaptability for Vesicle Trafficking Pathways

Vesicle trafficking systems play essential roles in the communication between the organelles of eukaryotic cells and also between cells and their environment. Endocytosis and the late secretory route are mediated by clathrin-coated vesicles, while the COat Protein I and II (COPI and COPII) routes stand for the bidirectional traffic between the ER and the Golgi apparatus. Despite similar fundamental organizations, the molecular machinery, functions, and evolutionary characteristics of the three systems are very different. In this work, we compiled the basic functional protein groups of the three main routes for human and yeast and analyzed them from the structural disorder perspective. We found similar overall disorder content in yeast and human proteins, confirming the well-conserved nature of these systems. Most functional groups contain highly disordered proteins, supporting the general importance of structural disorder in these routes, although some of them seem to heavily rely on disorder, while others do not. Interestingly, the clathrin system is significantly more disordered (,23%) than the other two, COPI (,9%) and COPII (,8%). We show that this structural phenomenon enhances the inherent plasticity and increased evolutionary adaptability of the clathrin system, which distinguishes it from the other two routes. Since multi-functionality (moonlighting) is indicative of both plasticity and adaptability, we studied its prevalence in vesicle trafficking proteins and correlated it with structural disorder. Clathrin adaptors have the highest capability for moonlighting while also comprising the most highly disordered members. The ability to acquire tissue specific functions was also used to approach adaptability: clathrin route genes have the most tissue specific exons encoding for protein segments enriched in structural disorder and interaction sites. Overall, our results confirm the general importance of structural disorder in vesicle trafficking and suggest major roles for this structural property in shaping the differences of evolutionary adaptability in the three routes

A possible integration of multiple paradigms used in integrated assessment modelling of climate change

Most of the models used to analyze international climate policy treat the problem as if it operates on only a single level. This is the result of a reliance on integrated assessment models (IAMs) that, for reasons of analytical tractability, typically employ assumptions that allow the economy to be modeled as if it is managed by a single, utility-maximizing central planner without regard to the influence of either lower-level actors or international pressures. While game theoretic models have been used to study international negotiations, they generally do not consider feedback from domestic actors who have heterogeneous beliefs and vulnerability to climate change. In this paper, we provide an overview of a preliminary policy modeling framework, called ENGAGE, styled after the Putnam two-level game in which interactions among negotiators at the international level are linked with the preferences of constituents at the domestic level. Domestic constituents in our model include firms and households who function as agents within an evolutionary representation of economic growth, energy technology, and climate change, resulting in a two-way dynamic feedback between international agreements and domestic policy outcomes. We present the basic elements of the two levels of the model and discuss plans for future model development

Integrated assessment of mitigation strategies using an agent-based model of the linked energy, economic, and climate system

An alternative to the typical application of rational choice models to climate policy is the coupling of agent-based modeling and exploratory approaches. Agent-based models (ABMs) represent the world as made up of heterogeneous, boundedly-rational agents who act in their own interests and yet engage in substantive communication. Rather than focusing on optimal outcomes, agent-based models are primarily concerned with the evolution of large-scale properties that ‘emerge’ from the lower-level behavior. Consequently, ABMs have the potential to address complex system properties and generate a wider array of plausible storylines than more traditional integrated assessment modeling methodologies. We provide an overview of a new agent-based model of economic growth, energy technology, and climate change, and demonstrate use of the model for scenario discovery. Scenario discovery generates ensembles of plausible futures under alternative assumptions and hypotheses concerning system behavior. Such scenarios can help identify policy vulnerabilities and opportunities, thus supporting the design of robust climate change mitigation strategies

Automation of Pivot Sprinkler Irrigation Systems to More Efficiently Utilize Rainfall and Irrigation Water

A study was conducted to develop automated pivot sprinkler irrigation systems and determine if such systems use less water and energy than manually operated systems. The study was conducted near Earth, Texas, using irrigation systems located on producers farms. Sensors with transmitters and receivers were constructed and tested so that the irrigation systems can be controlled by wind, soil water tension, and rainfall. The sensors can be used separately or in combination to control the irrigation systems. For several reasons it was not possible to determine if automated systems use less water and energy than manually operated systems. The major reason was the low capacity of the wells (114 to 204 m3/hr) supplying the irrigation systems. To meet crop water requirements and losses due to evaporation and runoff, the well capacity should be at least 284 m3/hr. Since the wells could not supply adequate water, soil water tension was out of the tensiometer range for the last 60 days of the growing season. Considerable variation in soil water tension and content was noted between irrigation systems and within quadrants of each irrigation system. Systems planted to cotton would probably be easier to automate than those planted in corn because of the lower water requirements of cotton. The wind and rainfall controls have more promise to aid in increasing water use efficiency than controls activated by soil water sensors. Wind controls could be used during preirrigation when more time is available to apply water and rainfall controls could be an aid to producers with remotely located irrigation systems

Radar Altimetry as a Robust Tool for Monitoring the Active Lava Lake at Erebus Volcano, Antarctica

The level of lava within a volcanic conduit reflects the overpressure within a connected magma reservoir. Continuous monitoring of lava level can therefore provide critical insights into volcanic processes, and aid hazard assessment. However, accurate measurements of lava level are not easy to make, partly owing to the often dense fumes that hinder optical techniques. Here, we present the first radar instrument designed for the purpose of monitoring lava level, and report on its successful operation at Erebus volcano, Antarctica. We describe the hardware and data processing steps followed to extract a time series of lava lake level, demonstrating that we can readily resolve ~1 m cyclic variations in lake level that have previously been recognised at Erebus volcano. The performance of the radar (continuous, automated data collection in temperatures of around -30°C) indicates the suitability of this approach for sustained automated measurements at Erebus and other volcanoes with lava lakes