ILDG Middleware Working Group Status Report

We report on the status of the ILDG Middleware Working Group.Comment: Lat2004(ILDG

Hamiltonian formulation of SL(3) Ur-KdV equation

We give a unified view of the relation between the $SL(2)$ KdV, the mKdV, and the Ur-KdV equations through the Fr\'{e}chet derivatives and their inverses. For this we introduce a new procedure of obtaining the Ur-KdV equation, where we require that it has no non-local operators. We extend this method to the $SL(3)$ KdV equation, i.e., Boussinesq(Bsq) equation and obtain the hamiltonian structure of Ur-Bsq equationin a simple form. In particular, we explicitly construct the hamiltonian operator of the Ur-Bsq system which defines the poisson structure of the system, through the Fr\'{e}chet derivative and its inverse.Comment: 12 pages, KHTP-93-03 SNUTP-93-2

Fibrations in CICY Threefolds

In this work we systematically enumerate genus one fibrations in the class of 7,890 Calabi-Yau manifolds defined as complete intersections in products of projective spaces, the so-called CICY threefolds. This survey is independent of the description of the manifolds and improves upon past approaches that probed only a particular algebraic form of the threefolds (i.e. searches for "obvious" genus one fibrations as in [1,2]). We also study K3-fibrations and nested fibration structures. That is, K3 fibrations with potentially many distinct elliptic fibrations. To accomplish this survey a number of new geometric tools are developed including a determination of the full topology of all CICY threefolds, including triple intersection numbers. In 2,946 cases this involves finding a new "favorable" description of the manifold in which all divisors descend from a simple ambient space. Our results consist of a survey of obvious fibrations for all CICY threefolds and a complete classification of all genus one fibrations for 4,957 "Kahler favorable" CICYs whose Kahler cones descend from a simple ambient space. Within the CICY dataset, we find 139,597 obvious genus one fibrations, 30,974 obvious K3 fibrations and 208,987 nested combinations. For the Kahler favorable geometries we find a complete classification of 377,559 genus one fibrations. For one manifold with Hodge numbers (19,19) we find an explicit description of an infinite number of distinct genus-one fibrations extending previous results for this particular geometry that have appeared in the literature. The data associated to this scan is available at http://www1.phys.vt.edu/cicydata .Comment: 54 pages, 4 tables, 4 figure

Scalar Non-Luminous Matter in Galaxies

As a candidate for dark matter in galaxies, we study an SU(3) triplet of complex scalar fields which are non-minimally coupled to gravity. In the spherically symmetric static spacetime where the flat rotational velocity curves of stars in galaxies can be explained, we find simple solutions of scalar fields with SU(3) global symmetry broken to U(1) X U(1), in an exponential scalar potential, which will be useful in a quintessence model of the late-time acceleration of the Universe.Comment: 6 pages, no figure, LaTex. Submitted to IJMP

Comparing the R algorithm and RHMC for staggered fermions

The R algorithm is widely used for simulating two flavours of dynamical staggered fermions. We give a simple proof that the algorithm converges to the desired probability distribution to within O(dt^2) errors, but show that the relevant expansion parameter is (dt/m)^2, m being the quark mass. The Rational Hybrid Monte Carlo (RHMC) algorithm provides an exact (i.e., has no step size errors) alternative for simulating the square root of the staggered Dirac operator. We propose using it to test the validity of the R algorithm for simulations carried out with dt m.Comment: 3 pages, proceedings from Lattice 2002 poster presentatio

Local Hall effect in hybrid ferromagnetic/semiconductor devices

We have investigated the magnetoresistance of ferromagnet-semiconductor devices in an InAs two-dimensional electron gas system in which the magnetic field has a sinusoidal profile. The magnetoresistance of our device is large. The longitudinal resistance has an additional contribution which is odd in applied magnetic field. It becomes even negative at low temperature where the transport is ballistic. Based on the numerical analysis, we confirmed that our data can be explained in terms of the local Hall effect due to the profile of negative and positive field regions. This device may be useful for future spintronic applications.Comment: 4 pages with 4 fugures. Accepted for publication in Applied Physics Letter

Proteomic analysis of Bifidobacterium longum subsp. infantis reveals the metabolic insight on consumption of prebiotics and host glycans.

Bifidobacterium longum subsp. infantis is a common member of the intestinal microbiota in breast-fed infants and capable of metabolizing human milk oligosaccharides (HMO). To investigate the bacterial response to different prebiotics, we analyzed both cell wall associated and whole cell proteins in B. infantis. Proteins were identified by LC-MS/MS followed by comparative proteomics to deduce the protein localization within the cell. Enzymes involved in the metabolism of lactose, glucose, galactooligosaccharides, fructooligosaccharides and HMO were constitutively expressed exhibiting less than two-fold change regardless of the sugar used. In contrast, enzymes in N-Acetylglucosamine and sucrose catabolism were induced by HMO and fructans, respectively. Galactose-metabolizing enzymes phosphoglucomutase, UDP-glucose 4-epimerase and UTP glucose-1-P uridylytransferase were expressed constitutively, while galactokinase and galactose-1-phosphate uridylyltransferase, increased their expression three fold when HMO and lactose were used as substrates for cell growth. Cell wall-associated proteomics also revealed ATP-dependent sugar transport systems associated with consumption of different prebiotics. In addition, the expression of 16 glycosyl hydrolases revealed the complete metabolic route for each substrate. Mucin, which possesses O-glycans that are structurally similar to HMO did not induced the expression of transport proteins, hydrolysis or sugar metabolic pathway indicating B. infantis do not utilize these glycoconjugates