54 research outputs found
Systematic Fragmentation Method and the Effective Fragment Potential: An Efficient Method for Capturing Molecular Energies
Nucleophilic properties of purine bases: inherent reactivity versus reaction conditions
Efficient Molecular Dynamics Simulations of Multiple Radical Center Systems Based on the Fragment Molecular Orbital Method
A Study of the Interaction between a Family of Gemini Amphiphilic Pseudopeptides and Model Monomolecular Film Membranes Formed with a Cardiolipin
Molecular Organization of Nalidixate Conjugated Calixarenes in Bacterial Model Membranes Probed by Molecular Dynamics Simulation and Langmuir Monolayer Studies
Geometry optimization for large systems by the elongation method
Geometry optimization using the elongation
method is developed at the Hartree–Fock level of theory.
The formalism of elongation energy gradient and its
accuracy have been validated by model systems calcula-
tions. The linear poly-hydrogen fluoride, polyethylene,
planar polyacetylene and extended polyalanine are opti-
mized using different basis sets and compared with con-
ventional results. The results show that the elongation
Hartree–Fock geometry optimization (ELG-HF-OPT) can
reproduce conventional calculation results with high
accuracy for various basis sets. For the poly-hydrogen fluoride calculation at 6-31G(d,p) basis set, moreover,
ELG-HF-OPT gives a structure with lower ground state
energy than conventional results with the same optimiza-
tion convergence threshold. This means the potential pos-
sibility of ELG-HF-OPT can locate a more stable structure
than conventional calculations with the same optimization
convergence criteria. Therefore, the ELG-HF-OPT would
provide one more choice for performing optimization on
complicated large systems
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