ECONOMICS OF THE FROZEN FOOD DISTRIBUTION SYSTEM

Agribusiness,

An Ecological Study of the Lagoons Surrounding the John F. Kennedy Space Center, Brevard County, Florida

The studies reported here are the result of a three year effort to define the major biological, microbiological, chemical and geological characteristics of the water of the Indian River lagoon around the Kennedy Space Center and to determine the movements of those waters within and between the various basins. This work was the result of a jointly funded agreement between the Florida Institute of Technology and John F. Kennedy Space Center, NASA under NASA Grant NGR 10-015-008, dated April 11, 1972. This cost sharing grant was renewed for each of two successive years. Sampling operations were terminated August 31, 1975

Site Saturation Mutagenesis Applications on <i>Candida methylica</i> Formate Dehydrogenase

In NADH regeneration, Candida methylica formate dehydrogenase (cmFDH) is a highly significant enzyme in pharmaceutical industry. In this work, site saturation mutagenesis (SSM) which is a combination of both rational design and directed evolution approaches is applied to alter the coenzyme specificity of NAD+-dependent cmFDH from NAD+ to NADP+ and increase its thermostability. For this aim, two separate libraries are constructed for screening a change in coenzyme specificity and an increase in thermostability. To alter the coenzyme specificity, in the coenzyme binding domain, positions at 195, 196, and 197 are subjected to two rounds of SSM and screening which enabled the identification of two double mutants D195S/Q197T and D195S/Y196L. These mutants increase the overall catalytic efficiency of NAD+ to 5.6×104-fold and 5×104-fold value, respectively. To increase the thermostability of cmFDH, the conserved residue at position 1 in the catalytic domain of cmFDH is subjected to SSM. The thermodynamic and kinetic results suggest that 8 mutations on the first residue can be tolerated. Among all mutants, M1L has the best residual activity after incubation at 60°C with 17%. These studies emphasize that SSM is an efficient method for creating “smarter libraries” for improving the properties of cmFDH

A hypothetico-deductive approach to assessing the social function of chemical signalling in a non-territorial solitary carnivore

The function of chemical signalling in non-territorial solitary carnivores is still relatively unclear. Studies on territorial solitary and social carnivores have highlighted odour capability and utility, however the social function of chemical signalling in wild carnivore populations operating dominance hierarchy social systems has received little attention. We monitored scent marking and investigatory behaviour of wild brown bears Ursus arctos, to test multiple hypotheses relating to the social function of chemical signalling. Camera traps were stationed facing bear ‘marking trees’ to document behaviour by different age sex classes in different seasons. We found evidence to support the hypothesis that adult males utilise chemical signalling to communicate dominance to other males throughout the non-denning period. Adult females did not appear to utilise marking trees to advertise oestrous state during the breeding season. The function of marking by subadult bears is somewhat unclear, but may be related to the behaviour of adult males. Subadults investigated trees more often than they scent marked during the breeding season, which could be a result of an increased risk from adult males. Females with young showed an increase in marking and investigation of trees outside of the breeding season. We propose the hypothesis that females engage their dependent young with marking trees from a young age, at a relatively ‘safe’ time of year. Memory, experience, and learning at a young age, may all contribute towards odour capabilities in adult bears

Use of the SAW sensor electronic nose for detecting the adulteration of virgin coconut oil with RBD palm kernel olein.

An electronic nose (zNose™) was applied to the detection of adulteration of virgin coconut oil. The system, which is based on a surface acoustic wave sensor was used to generate a pattern of volatile compounds present in the samples. Virgin coconut oil was mixed with refined, bleached and deodorized palm kernel olein at a level of adulteration from 1 to 20% (wt/wt). Adulterant peaks were identified from the chromatogram profile and fitted to a curve using linear regression. The best relationship (R 2 = 0.91) was obtained between the peak tentatively identified as methyl dodecanoate and the percentage of palm kernel olein added. Pearson’s correlation coefficients (r) of 0.92 and 0.89 were obtained between adulterant peak methyl dodecanoate and of the iodine and peroxide values, respectively. Principal component analysis (PCA) was used to differentiate between pure and adulterated samples. The PCA provided good differentiation of samples with 74% of the variation accounted for by PC 1 and 17% accounted for by PC 2. Pure samples formed a separate cluster from all of the adulterated samples

Phylogenetic Signal Variation in the Genomes of Medicago (Fabaceae)

Genome-scale data offer the opportunity to clarify phylogenetic relationships that are difficult to resolve with few loci, but they can also identify genomic regions with evolutionary history distinct from that of the species history. We collected whole-genome sequence data from 29 taxa in the legume genus Medicago, then aligned these sequences to the Medicago truncatula reference genome to confidently identify 87 596 variable homologous sites. We used this data set to estimate phylogenetic relationships among Medicago species, to investigate the number of sites needed to provide robust phylogenetic estimates and to identify specific genomic regions supporting topologies in conflict with the genome-wide phylogeny. Our full genomic data set resolves relationships within the genus that were previously intractable. Subsampling the data reveals considerable variation in phylogenetic signal and power in smaller subsets of the data. Even when sampling 5000 sites, no random sample of the data supports a topology identical to that of the genome-wide phylogeny. Phylogenetic relationships estimated from 500-site sliding windows revealed genome regions supporting several alternative species relationships among recently diverged taxa, consistent with the expected effects of deep coalescence or introgression in the recent history of Medicago. [Medicago; phylogenomics; whole-genome resequencing.

Fuzzy logic modelling of snow leopard populations in response to threats from climate change

The snow leopard population in Kazakhstan represents a small but important component of the species range, making up around 2.7% of the global range, of which 18,673 km2 lies within protected areas. The most recent population estimate, by Jackson et al. (2008), suggests that there are around 180-200 individuals. Prior to this study there were no reliable estimates of snow leopard numbers in Almaty State Nature Reserve, one of the only two stable populations of snow leopards in Kazakhstan. In total 40 camera traps were deployed for a total of 5152 traps nights and yielded 50 independent capture events of snow leopards (with between 1 and 10 images per event), 275 capture events of primary prey and 68 capture events of secondary prey. The study capture rate of 0.97 independent capture events per 100 trap nights is at the higher end of the range experienced by other studies (see McCarthy et al., 2008) and mark-recapture modelling estimated 11-18 individual snow leopards in the study area which suggests density between 4.4 and 7.2 individuals per 100km2. Our population estimate for the whole reserve is 39.6 individuals, with a standard error of 5.44536 individuals and a 95% confidence interval of 39 to 64. Analysis of movement patterns suggests that individuals frequently crossed valley bottoms and used densely forested habitat in winter, which may indicated prey switching from ibex to forest ungulates. The University of Cumbria has developed a fuzzy logic model which aggregates a wide range of socio-economic and ecological data and provides a tool that can be used to inform the sustainable natural resource and landscape management decision-making process. Our model predicts the consistent negative impact of climate change (warming) at elevations below the tree line; this is particularly significant as the potential positive impacts for snow leopards at high elevation are slower to kick in thereby increasing the habitat squeeze associated with climate change in mountain habitats

Determining the Effect of a CBC-based Oxime on Cell Viability and Apoptosis in Sea Urchin Embryos

Natural products are an important source of existing and potential new anti-cancer drugs. We have previously shown that cannabichromene (CBC) oxime and several CBC oxime esters have potent anti-mitotic activity when used in bioassays with sea urchin embryos. In this study we explored the effect of the CBC oxime on cell viability and apoptosis in sea urchin embryos. Newly fertilized or gastrula stage embryos were combined with 10µM or 50uM CBC oxime as well as a DMSO only control. At various timepoints, samples of the embryos were removed from the cultures and stained with three different fluorescent dyes. NucBlue (ThermoFisher) was used to determine cell number, apoptotic effects were observed with CellEvent caspace3/7 (ThermoFisher), and cell viability was determined with Live-or-Dye (Biotium). As expected, there was a clear effect of the CBC oxime on the rate of cell division. The embryos exposed to both 10uM and 50uM CBC oxime showed a reduction in cell division compared to the controls, with an almost total inhibition in the higher concentration. Cell viability assays using the vital stain Live-or-Dye showed a concentration dependent effect of the CBC oxime on cell viability, with levels of cell death reaching almost 80% in the 50uM concentration by 3 hours after drug addition. Finally, staining with CellEvent caspace3/7, which indicates the presence of active caspase activity, demonstrated concentration dependent induction of apoptosis following exposure to the CBC oxime drug. Therefore, the loss of cell viability observed was due to apoptosis rather than necrosis. There are clear toxic effects seen when this drug is exposed to developing sea urchin embryos, suggesting that it might have potential use as a chemotherapy agent capable of inducing apoptosis in cancer cells. We plan to test this hypothesis on human cancer cell lines in the near future

First narrow-band search for continuous gravitational waves from known pulsars in advanced detector data

Spinning neutron stars asymmetric with respect to their rotation axis are potential sources of continuous gravitational waves for ground-based interferometric detectors. In the case of known pulsars a fully coherent search, based on matched filtering, which uses the position and rotational parameters obtained from electromagnetic observations, can be carried out. Matched filtering maximizes the signalto- noise (SNR) ratio, but a large sensitivity loss is expected in case of even a very small mismatch between the assumed and the true signal parameters. For this reason, narrow-band analysis methods have been developed, allowing a fully coherent search for gravitational waves from known pulsars over a fraction of a hertz and several spin-down values. In this paper we describe a narrow-band search of 11 pulsars using data from Advanced LIGO’s first observing run. Although we have found several initial outliers, further studies show no significant evidence for the presence of a gravitational wave signal. Finally, we have placed upper limits on the signal strain amplitude lower than the spin-down limit for 5 of the 11 targets over the bands searched; in the case of J1813-1749 the spin-down limit has been beaten for the first time. For an additional 3 targets, the median upper limit across the search bands is below the spin-down limit. This is the most sensitive narrow-band search for continuous gravitational waves carried out so far