Life Cycle of \u3ci\u3eIsoperla Lata\u3c/i\u3e (Plecoptera: Perlodidae) in a Central Wisconsin Trout Stream

Monthly qualitative samples of Isoperla lata Frison were made from January 1992 to June 1993 in Ripley Creek, a small second order trout stream in Lincoln County Wisconsin. Additional collecting and an in-stream hatching experiment were conducted in 1994. This species exhibited an S1 (slow) univoltine life cycle. Emergence was synchronous and occurred in late April through early May when stream temperatures in the field were approximately 9-14° C and laboratory stream temperatures were 7-17° C. Laboratory longevity was 2-25 (x = 18.2 ± 4.51) days for males and 7-39 (x = 21.7 ± 5.35) days for females. Mean fecundity of dissected females was 322 ± 122 eggs/female. Females did not deposit egg masses in the laboratory until being held together with males inside modified screened plastic containers. Field-collected females did not have eggs. The egg shape was ovoid and circular in cross section. Mature eggs were light brown and measured 371.7 ± 12.6 mm and 260.7 ± 10.2 mm in length and width respectively. Eggs required a 40-46 day in-stream incubation period and first instar nymphs hatched syn- chronously over a two day period when stream temperature reached 20°C. Nymphal growth was nearly exponential from June to January and then declined until emergence. The greatest growth increment occurred between June and October and the average maximum size attained occurred in February. Males and females had approximately 18 and 19 instars respectively. Nymphs were primarily carnivorous throughout development and fed on larval Chironomidae, Ephemeroptera, and Plecoptera

The changes in chemical composition during development of the bovine nuchal ligament

Whole bovine nuchal ligaments, or portions thereof (in the case of commercially valuable animals), were obtained from 45 animals (28 fetal and 17 postnatal) ranging in age from 110 days of gestation to 10 yr. Insoluble elastin was quantitatively prepared from the fresh ligaments by extraction with hot alkali and by a combination of multiple extractions with alkaline buffer and then repeated autoclaving. When adult samples were examined, the yields of insoluble residue by these two methods were very similar, but with young fetal samples the second method gave significantly higher values, because of incomplete purification of the elastin residue. The changes in the concentration of collagen, alkali-insoluble elastin, and DNA have been examined. DNA concentration, and, thus, cell population density, fell progressively during the fetal period of development, to reach a steady value soon after birth. Collagen appeared in appreciable quantities before elastin, but its concentration was rapidly halved at about the time of birth. Insoluble elastin concentration was low until the end of the 7th fetal month, at which time it began to rise rapidly. The rate of increase in elastin concentration remained high throughout the next 10–12 wk, by which time the adult value had been reached. Quantitative studies, on the basis of the whole ligament, showed that the total cell content rises to a maximum at birth, but falls soon after to a level about half that at birth. Total collagen production and elastin deposition continue at a steady, maximal rate over the interval from 235 days of gestation to the end of the 1st postnatal month. It is concluded that the immediate postnatal period would be the most favorable phase in which to attempt the isolation of the soluble precursor elastin

The role of sea-level change and marine anoxia in the Frasnian-Famennian (Late Devonian) mass extinction

Johnson et al. (Johnson, J.G., Klapper, G., Sandberg, C.A., 1985. Devonian eustatic fluctuations in Euramerica. Geological Society of America Bulletin 96, 567–587) proposed one of the first explicit links between marine anoxia, transgression and mass extinction for the Frasnian–Famennian (F–F, Late Devonian) mass extinction. This cause-and-effect nexus has been accepted by many but others prefer sea-level fall and cooling as an extinction mechanism. New facies analysis of sections in the USA and Europe (France, Germany, Poland), and comparison with sections known from the literature in Canada, Australia and China reveal several high-frequency relative sea-level changes in the late Frasnian to earliest Famennian extinction interval. A clear signal of major transgression is seen within the Early rhenana Zone (e.g. drowning of the carbonate platform in the western United States). This is the base of transgressive–regressive Cycle IId of the Johnson et al. (Johnson, J.G., Klapper, G., Sandberg, C.A., 1985. Devonian eustatic fluctuations in Euramerica. Geological Society of America Bulletin 96, 567–587) eustatic curve. This was curtailed by regression and sequence boundary generation within the early linguiformis Zone, recorded by hardground and karstification surfaces in sections from Canada to Australia. This major eustatic fall probably terminated platform carbonate deposition over wide areas, especially in western North America. The subsequent transgression in the later linguiformis Zone, recorded by the widespread development of organic-rich shale facies, is also significant because it is associated with the expansion of anoxic deposition, known as the Upper Kellwasser Event. Johnson et al.'s (Johnson, J.G., Klapper, G., Sandberg, C.A., 1985. Devonian eustatic fluctuations in Euramerica. Geological Society of America Bulletin 96, 567–587) original transgression-anoxia–extinction link is thus supported, although some extinction losses of platform carbonate biota during the preceeding regression cannot be ruled out. Conodont faunas suffered major losses during the Upper Kellwasser Event, with deep-water taxa notably affected. This renders unreliable any eustatic analyses utilising changes in conodont biofacies. Claims for a latest Frasnian regression are not supported, and probably reflect poor biostratigraphic dating of the early linguiformis Zone sequence boundary

Subtotal pancreatectomy for cancer: closure of the pancreatic remnant with staplers

This paper presents a 2-year series of 26 consecutive pancreatectomies for periampullary cancer where the pancreatic tail was closed with a stapler in order to avoid complications related to a pancreatico-digestive anastomosis. The follow-up period was 14 months or more. Seven patients developed operative complications. Pancreatic fistulas developed in 3 patients. The fistulas closed spontaneously in 2 of the patients after 2-4 months. Intraabdominal abscesses developed in 4 patients and required surgical drainage. In 1 of these patients, the abscess eroded a large vessel with a fatal outcome resulting in an operative mortality rate of 3.8%. A transient postoperative gastric stasis was observed in seven patients. Postoperative hospital median stay was 27 days (range 10-83 days). Eighteen patients have died after 4-30 months in recurrent disease and seven patients are alive after a follow-up period of 15-29 months. Pancreatic endocrine function seemed well preserved; diabetes mellitus has developed in only one patient. In conclusion, it appears that subtotal pancreatectomy with closure of the pancreatic remnant with staples gives a low morbidity and mortality. Although the conclusion should be tempered by the small number of patients, the results justify continued evaluation of this technique with long-term follow-up

Photon creation from vacuum and interactions engineering in nonstationary circuit QED

We study theoretically the nonstationary circuit QED system in which the artificial atom transition frequency, or the atom-cavity coupling, have a small periodic time modulation, prescribed externally. The system formed by the atom coupled to a single cavity mode is described by the Rabi Hamiltonian. We show that, in the dispersive regime, when the modulation periodicity is tuned to the `resonances', the system dynamics presents the dynamical Casimir effect, resonant Jaynes-Cummings or resonant Anti-Jaynes-Cummings behaviors, and it can be described by the corresponding effective Hamiltonians. In the resonant atom-cavity regime and under the resonant modulation, the dynamics is similar to the one occurring for a stationary two-level atom in a vibrating cavity, and an entangled state with two photons can be created from vacuum. Moreover, we consider the situation in which the atom-cavity coupling, the atomic frequency, or both have a small nonperiodic time modulation, and show that photons can be created from vacuum in the dispersive regime. Therefore, an analog of the dynamical Casimir effect can be simulated in circuit QED, and several photons, as well as entangled states, can be generated from vacuum due to the anti-rotating term in the Rabi Hamiltonian.Comment: 14 pages, 6 figures. Talk presented at the International Workshop "60 Years of Casimir Effect", 23 - 27 June, 2008, Brasili

Older adults’ experiences of sexual difficulties: Qualitative findings from the English Longitudinal Study on Ageing (ELSA)

There is a growing body of evidence demonstrating that sexual activity is important to the quality of life of older adults, and that it can be influenced by physical, psychological, and social factors. However, older adults’ experiences of sexual difficulties remain relatively unexplored. This article draws on qualitative data collected as part of the English Longitudinal Study of Ageing (ELSA). Participants answered a Sexual Relationships and Activities Questionnaire (SRA-Q), which included an open comment box for further details, 1,084 (1/7) of which were completed. These data were analyzed using Template Analysis, and findings on the experiences of sexual difficulties are presented in this article. Sexual difficulties were contextualized within the couple relationship and could be detrimental to the relationship, particularly if the partner would not seek professional help. Participants reported that sexual difficulties could also have a negative impact on psychological well-being, described mainly as frustration, depression, and sadness. For some participants the supportive nature of their relationship buffered these impacts. Few had sought professional help; those who had reported helpful and unhelpful experiences. These findings add to the limited evidence base and have implications for health care in the context of global aging and a growing recognition of older adults’ sexual rights

A titanium-nitride near-infrared kinetic inductance photon-counting detector and its anomalous electrodynamics

We demonstrate single-photon counting at 1550 nm with titanium-nitride (TiN) microwave kinetic inductance detectors. Energy resolution of 0.4 eV and arrival-time resolution of 1.2 microseconds are achieved. 0-, 1-, 2-photon events are resolved and shown to follow Poisson statistics. We find that the temperature-dependent frequency shift deviates from the Mattis-Bardeen theory, and the dissipation response shows a shorter decay time than the frequency response at low temperatures. We suggest that the observed anomalous electrodynamics may be related to quasiparticle traps or subgap states in the disordered TiN films. Finally, the electron density-of-states is derived from the pulse response.Comment: 4 pages, 3 figure

Progression of RNA-sequencing to single-cell applications

New methods enable new discoveries. My time as a PhD student has run in parallel with the maturation of the RNA-seq method, and I have used it to discover basic properties of gene expression and transcriptomes. My part has been bioinformatics – the computer analysis of biological data. RNA-seq quantifies gene expression for all genes in one experiment, allowing discoveries without prior knowledge, as opposed to single-gene hypothesis testing. When I started my PhD, this was done by microarray followed by qRT-PCR validation, which can be arduous. In contrast to microarrays, RNA-seq quantifies expression with little ambiguity of which gene each expression value corresponds to, and in absolute terms. But at the time, data analysis of RNA-seq was full of unknowns and there were little software available. Nowadays, partly the result of my work, the data analysis is much less complicated, and RNA-seq can be performed on diminutive samples, down to single cells, which was not viable using microarrays. My first study (Paper I) used one of the very first RNA-seq datasets to study general features of transcriptomes, such as mean mRNA length (~1,500 nt) and the number of genes expressed per tissue (~13,000). I also found special features of some tissues: the liver transcriptome is dominated by a few highly expressed gene, brain expresses especially long mRNAs and testis expresses many more genes than other tissues. Following this tissue RNA-seq study, I evaluated a new library preparation method for single-cell RNA-seq (Paper III), developed before the prevalence of single-cell RNA-seq. I used technical replicates to show that the method was accurate and reliable for the more highly expressed genes at single-cell RNA levels, and with input RNA amounts corresponding to >50 cells it produced as good quality data as bulk RNA-seq. Then the method was applied on melanoma cells isolated from human blood, and I listed surface antigen genes that distinguished these circulating tumour cells from other cells in the blood. This single-cell RNA-seq method was then applied on pre-implantation embryo cells (Paper IV). Using first-generation crosses between two mouse strains, I could separate the expression from the maternal and the paternal copies of the genes. I found that 12-24% of the genes express only one of their two copies in any given cell, in a random manner that affects almost all the expressed genes. I also found that the two copies are expressed independently from each other. Finally, I studied Sox transcription factors during neural development (Paper II), combining RNA-seq and microarray data for different cell types with ChIP-seq data for transcription factor binding and histone modifications. I found that Sox proteins bind to the enhancers active in the stem cells where the Sox proteins are active, but also to enhancers specific to subsequent cells in ii development. I also found that different Sox factors bind to much the same enhancers, and that they can induce histone modifications. In conclusion, my work has advanced the RNA-seq method and increased the understanding of transcriptional regulation and output

Circum-Greenland, ice-thickness measurements collected during PROMICE airborne surveys in 2007, 2011 and 2015

The Greenland ice sheet has experienced an average mass loss of 142 ± 49 Gt/yr from 1992 to 2011 (Shepherd et al. 2012), making it a significant contributor to sea-level rise. Part of the ice- sheet mass loss is the result of increased dynamic response of outlet glaciers (Rignot et al. 2011). The ice discharge from outlet glaciers can be quantified by coincident measurements of ice velocity and ice thickness (Thomas et al. 2000; van den Broeke et al. 2016). As part of the Programme for monitoring of the Greenland Ice Sheet (PROMICE; Ahlstrøm et al. 2008), three airborne surveys were carried out in 2007, 2011 and 2015, with the aim of measuring the changes in Greenland ice-sheet thicknesses. The purpose of the airborne surveys was to collect data to assess the dynamic mass loss of the Greenland ice sheet (Andersen et al. 2015). Here, we present these datasets of observations from ice-penetrating radar and airborne laser scanning, which, in combination, make us able to determine the ice thickness precisely. Surface-elevation changes between surveys are also presented, although we do not provide an in-depth scientific interpretation of these