Uniform acquisition modelling across PET imaging systems: unified scatter modelling

RIN factor of all samples used for Illumina sequencing. (PDF 225 kb

Estimation of an image derived input function with MR-defined carotid arteries in FDG-PET human studies using a novel partial volume correction method

Kinetic analysis of (18)F-fluorodeoxyglucose positron emission tomography data requires an accurate knowledge the arterial input function. The gold standard method to measure the arterial input function requires collection of arterial blood samples and is an invasive method. Measuring an image derived input function is a non-invasive alternative but is challenging due to partial volume effects caused by the limited spatial resolution of the positron emission tomography scanners. In this work, a practical image derived input function extraction method is presented, which only requires segmentation of the carotid arteries from MR images. The simulation study results showed that at least 92% of the true intensity could be recovered after the partial volume correction. Results from 19 subjects showed that the mean cerebral metabolic rate of glucose calculated using arterial samples and partial volume corrected image derived input function were 26.9 and 25.4 mg/min/100 g, respectively, for the grey matter and 7.2 and 6.7 mg/min/100 g for the white matter. No significant difference in the estimated cerebral metabolic rate of glucose values was observed between arterial samples and corrected image derived input function (p > 0.12 for grey matter and white matter). Hence, the presented image derived input function extraction method can be a practical alternative to noninvasively analyze dynamic (18)F-fluorodeoxyglucose data without the need for blood sampling

Effect of scatter correction when comparing attenuation maps: Application to brain PET/MR

Email Print Request Permissions In PET imaging, attenuation and scatter corrections are an essential requirement to accurately quantify the radionuclide uptake. In the context of PET/MR scanners, obtaining the attenuation information can be challenging. Various authors have quantified the effect of an imprecise attenuation map on the reconstructed PET image but its influence on scatter correction has usually been ignored. In this paper, we investigate the effects of imperfect attenuation maps (μmaps) on the scatter correction in a simulation setting. We focused our study on three μmaps: the reference μmap derived from a CT image, and two MR-based methods. Two scatter estimation strategies were implemented: a μmap-specific scatter estimation and an ideal scatter estimation relying only on the reference CT μmap. The scatter estimation used the Single Scatter Simulation algorithm with tail-fitting. The results show that, for FDG brain PET, regardless of the μmap used in the reconstruction, the difference on PET images between μmap-specific and ideal scatter estimations is small (less than 1%). More importantly, the relative error between attenuation correction methods does not change depending on the scatter estimation method included in the simulation and reconstruction process. This means that the effect of errors in the μmap on the PET image is dominated by the attenuation correction, while the scatter estimate is relatively unaffected. Therefore, while scatter correction improves reconstruction accuracy, it is unnecessary to include scatter in the simulation when comparing different attenuation correction methods for brain PET/MR

Uniform acquisition modelling across PET imaging systems: Unified scatter modelling

© 2016 IEEE. PET imaging is an important tool commonly used for studying disease by research consortia which implement multi-centre studies to improve the statistical power of findings. The UK government launched the Dementias Platform UK to facilitate one of the world's largest dementia population study involving national centres equipped with state-of-the-art PET/MR scanners from two major vendors. However, the difference in PET detector technology between the two scanners involved makes the standardisation of data acquisition and image reconstruction necessary. We propose a new approach to PET acquisition system modelling across different PET systems and technologies, focusing in particular on unified scatter estimation across TOF (time-of-flight) and non-TOF PET systems. The proposed scatter modelling is fully 3D and voxel based, as opposed to the popular line-of-response driven methods. This means that for each emitting voxel an independent 3D scatter estimate is found, inherently preserving the necessary information for TOF calculations as well as accounting for the large axial field of view. With adequate sampling of the input images, the non-TOF scatter estimate is identical to the summed TOF estimates across TOF bins, without an additional computational cost used for the TOF estimation. The model is implemented using the latest NVIDA GPU CUDA platform, allowing finer sampling of image space which is more essential for accurate TOF modelling. The high accuracy of the proposed scatter model is validated using Monte Carlo simulations. The model is deployed in our stand-alone image reconstruction pipeline for the Biograph mMR scanner, demonstrating accurate 3D scatter estimates resulting in uniform reconstruction for a high statistics phantom scan

Depression and alcohol use among the Dutch residential home elderly: Is there a shared vulnerability?

The purpose of this article is to investigate whether data from an older population sample would support the co-occurrence between depression and (problematic) alcohol use found in the general population and in clinical samples. Additionally, important predictors concerning these phenomena are identified in this population, by interviewing 156 inhabitants of five residential homes (mean age 84 years), using several questionnaires. The results showed that there is no link present between depression and alcohol use in this very old, mostly female population. Our results found a relation between the personality traits extraversion and openness to experience with both depression as well as alcohol use. Neuroticism was only related to depressive symptoms. Chronic diseases was related to non-alcohol use and parental problem drinking was found to be a risk factor for late life problem drinking. Future studies should aim at developing screening instruments for alcohol use in this population and, because of the importance of the personality traits, aim at developing or adapting of psychotherapeutic interventions fit for this population. Keywords: Depression, alcohol use, older adults, residential homes, personalit

Maximum-likelihood estimation of emission and attenuation images in 3D PET from multiple energy window measurements

This study explores the feasibility of incorporating energy information into a maximum-likelihood reconstruction of activity and attenuation (MLAA) framework. The attenuation and activity distributions were reconstructed from multiple energy window data, and a scatter function was added to the system model of the algorithm. The proposed energy-based method (MLAA-EB) was evaluated with simulated 3D phantom data, using the geometry and characteristics of a Siemens mMR PET-MR scanner. Results showed that the proposed algorithm is able to compensate for errors in the activity image caused by the incorrect assignment of attenuation values to the segmented MR. This is effective for small objects only, for large objects further solutions need to be found

Exploring the pastiche hegemony of men

In this article I explore the continued hegemony of certain men. I use interview extracts to help think through the notion of pastiche hegemony as a means of understanding how men, and narratives about them, have changed, but unequal power relations persist. In particular, I explore this process within men’s understandings of how they were able to gain and maintain influence and power at work. Through their reflexive reading of the changing shape of late modern Western society, these men believed they were able to craft selves and employ social scripts to produce social influence and power in situational and contingent forms. I argue that it is within this interactional process that the increasingly undermined ideological and material legacy of patriarchy might still be reified. As such, while there is clear evidence highlighting the undermining of men’s ability to assume power, within this article I theoretically unpack how certain men might be able to produce a localized, pastiche hegemony. This article is published as part of a thematic collection on gender studies

Detection Efficiency Modelling and Joint Activity and Attenuation Reconstruction in non-TOF 3D PET from Multiple-Energy Window Data

Emission-based attenuation correction (AC) meth-ods offer the possibility of overcoming quantification errors induced by conventional MR-based approaches in PET/MR imaging. However, the joint problem of determining AC and the activity of interest is strongly ill-posed in non-TOF PET. This can be improved by exploiting the extra information arising from low energy window photons, but the feasibility of this approach has only been studied with relatively simplistic analytic simulations so far. This manuscript aims to address some of the remaining challenges needed to handle realistic measurements; in particular, the detection efficiency (“normalisation”) estimation for each energy window is investigated. An energy-dependent detection efficiency model is proposed, accounting for the presence of unscattered events in the lower energy window due to detector scatter. Geometric calibration factors are estimated prior to the reconstruction for both scattered and unscattered events. Different reconstruction methods are also compared. Results show that geometric factors differ markedly between the energy windows and that our analytical model correspond in good approximation to Monte Carlo simulation; the multiple energy window reconstruction appears sensitive to input/model mismatch. Our method applies to Monte Carlo generated data but can be extended to measured data. This study is restricted to single scatter events

Joint Activity and Attenuation Reconstruction from Multiple Energy Window Data with Photopeak Scatter Re-Estimation in non-TOF 3D PET

Estimation of attenuation from PET data only is of interest for PET-MR and systems where CT is not available or recommended. However, when using data from a single energy window, emission-based non-TOF PET AC methods suffer from ‘cross-talk’ artefacts. Based on earlier work, this manuscript explores the hypothesis that cross-talk can be reduced by using more than one energy window. We propose an algorithm for the simultaneous estimation of both activity and attenuation images as well as the scatter component of the measured data from a PET acquisition, using multiple energy windows. The model for the measurements is 3D and accounts for the finite energy resolution of PET detectors; it is restricted to single scatter. The proposed MLAA-EB-S algorithm is compared with simultaneous estimation from a single energy window (MLAA-S). The evaluation is based on simulations using the characteristics of the Siemens mMR scanner. Phantoms of different complexity were investigated. In particular, a 3D XCAT torso phantom was used to assess the inpainting of attenuation values within the lung region. Results show that the cross-talk present in non-TOF MLAA reconstructions is significantly reduced when using multiple energy windows and indicate that the proposed approach warrants further investigation

Higher risk of gastrointestinal parasite infection at lower elevation suggests possible constraints in the distributional niche of Alpine marmots

Alpine marmots Marmota marmota occupy a narrow altitudinal niche within high elevation alpine environments. For animals living at such high elevations where resources are limited, parasitism represents a potential major cost in life history. Using occupancy models, we tested if marmots living at higher elevation have a reduced risk of being infected with gastrointestinal helminths, possibly compensating the lower availability of resources (shorter feeding season, longer snow cover and lower temperature) than marmots inhabiting lower elevations. Detection probability of eggs and oncospheres of two gastro-intestinal helminthic parasites, Ascaris laevis and Ctenotaenia marmotae, sampled in marmot feces, was used as a proxy of parasite abundance. As predicted, the models showed a negative relationship between elevation and parasite detectability (i.e. abundance) for both species, while there appeared to be a negative effect of solar radiance only for C. marmotae. Site-occupancy models are used here for the first time to model the constrains of gastrointestinal parasitism on a wild species and the relationship existing between endoparasites and environmental factors in a population of free-living animals. The results of this study suggest the future use of site-occupancy models as a viable tool to account for parasite imperfect detection in ecoparasitological studies, and give useful insights to further investigate the hypothesis of the contribution of parasite infection in constraining the altitudinal niche of Alpine marmots