Metaproteomics for analysis of microbial function in the environment

This report briefly describes the approach of using proteomic analyses to examine protein expression directly from environmental samples (termed metaproteomics). This approach has potential for solving one of the major challenges facing microbial ecologists, by providing insight of microbial function directly within samples

Gamma-ray spectrometry across the Upper Devonian basin succession at Kowala in the Holy Cross Mountains (Poland)

The Upper Devonian sequence at Kowala in the Holy Cross Mountains was logged using gamma-ray spectrometry, for investigating the changes of oxygenation level in the Late Devonian basin. The Th/U ratio indicates that oxygen levels were low throughout the Late Frasnian interval, with low peaks during the Kellwasser Events showing anoxic conditions in the basin. The F-F boundary interval was also oxygen deficient, but there may have been a brief reoxygenation at the boundary itself. By the Famennian crepida Zone, the basin gradually began to reoxygenate, but in the trachytera Zone another anoxic event, the Annulata Event occurred, causing a bloom rather than extinction of specially adapted taxa such as Guerichia. Thus the gamma-ray spectrometry data suggests that basinal anoxia prevailed through much of the Late Frasnian. The F-F extinction might have been the result of prolonged stresses imposed on the ecosystem, particularly during the euxinic Upper Kellwasser Event

Activity In Vitro of Clotrimazole against Canine Methicillin-Resistant and Susceptible Staphylococcus pseudintermedius

Emergence of multidrug-resistance in Staphylococcus pseudintermedius (SP) has increased interest in topical therapy as an alternative to systemic antibiotics in canine pyoderma. The antifungal imidazole, clotrimazole, is contained in numerous licensed canine ear preparations. Its in vitro activity against SP has not been evaluated, although previous studies have shown that the related imidazole, miconazole, has significant anti-staphylococcal efficacy. We therefore determined minimum inhibitory concentrations (MICs) of clotrimazole amongst 50 SP isolates (25 methicillin-resistant [MR]SP and susceptible [MS]SP) collected from dogs in Germany during 2010–2011 using an agar dilution method (CLSI VET01-A4). MICs amongst MRSP and MSSP were comparable (MIC50 and MIC90 = 1mg/L for both groups, p = 0.317); overall, 49 isolates had MIC = 1 mg/L and one had MIC = 0.5 mg/L. The relatively low MICs obtained in this study are likely to be exceeded by topical therapy and thus further clinical evaluation of clotrimazole use in canine superficial pyoderma and otitis externa caused by MRSP and MSSP is now warranted

NSV 11749: Symbiotic Nova, Not a Born-Again Red Giant

NSV 11749 is a little-studied variable star, discovered by W. J. Luyten, which had a long-duration outburst around the year 1903, reaching blue magnitude 12.5 at maximum. Following the outburst, it has apparently been quiescent at about blue magnitude 17 for the past century. It was recently suggested that NSV 11749 may have been a low- or intermediate-mass star that underwent a final helium shell flash, making it temporarily a "born-again" red giant. If so, it would be only the fourth known member of this class, along with V605 Aql, FG Sge, and V4334 Sgr. However, our newly obtained optical and near-IR spectra of the object show that it is instead a symbiotic binary, with strong Balmer and He I-II emission lines, combined with a cool red-giant companion of spectral type M1-2 III. The 1903 outburst was most likely a symbiotic nova event, of which less than a dozen are known at present.Comment: 13 pages, 3 figures, Accepted for publication in PAS

Heterotrophic bacteria exhibit a wide range of rates of extracellular production and decay of hydrogen peroxide

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bond, R. J., Hansel, C. M., & Voelker, B. M. Heterotrophic bacteria exhibit a wide range of rates of extracellular production and decay of hydrogen peroxide. Frontiers in Marine Science, 7, (2020): 72, doi:10.3389/fmars.2020.00072.Bacteria have been implicated as both a source and sink of hydrogen peroxide (H2O2), a reactive oxygen species which can both impact microbial growth and participate in the geochemical cycling of trace metals and carbon in natural waters. In this study, simultaneous H2O2 production and decay by twelve species of heterotrophic bacteria were evaluated in both batch and flow-through incubations. While wide species-to-species variability of cell-normalized H2O2 decay rate coefficients [2 × 10–8 to 5 × 10–6 hr–1 (cell mL–1)–1] was observed, these rate coefficients were relatively consistent for a given bacterial species. By contrast, observed production rates (below detection limit to 3 × 102 amol cell–1 hr–1) were more variable even for the same species. Variations based on incubation conditions in some bacterial strains suggest that external conditions may impact extracellular H2O2 levels either through increased extracellular production or leakage of intracellular H2O2. Comparison of H2O2 production rates to previously determined superoxide (O2–) production rates suggests that O2– and H2O2 production are not necessarily linked. Rates measured in this study indicate that bacteria could account for a majority of H2O2 decay observed in aqueous systems but likely only make a modest contribution to dark H2O2 production.This research was supported by NSF grant OCE-1131734/1246174 to BV and CH

Gamma-ray spectrometry across the Upper Devonian basin succession at Kowala in the Holy Cross Mountains (Poland)

The Upper Devonian sequence at Kowala in the Holy Cross Mountains was logged using gamma-ray spectrometry, for investigating the changes of oxygenation level in the Late Devonian basin. The Th/U ratio indicates that oxygen levels were low throughout the Late Frasnian interval, with low peaks during the Kellwasser Events showing anoxic conditions in the basin. The F-F boundary interval was also oxygen deficient, but there may have been a brief reoxygenation at the boundary itself. By the Famennian crepida Zone, the basin gradually began to reoxygenate, but in the trachytera Zone another anoxic event, the Annulata Event occurred, causing a bloom rather than extinction of specially adapted taxa such as Guerichia. Thus the gamma-ray spectrometry data suggests that basinal anoxia prevailed through much of the Late Frasnian. The F-F extinction might have been the result of prolonged stresses imposed on the ecosystem, particularly during the euxinic Upper Kellwasser Event

The power spectrum of galaxies in the 2dF 100k redshift survey

We compute the real-space power spectrum and the redshift-space distortions of galaxies in the 2dF 100k galaxy redshift survey using pseudo-Karhunen-Loeve eigenmodes and the stochastic bias formalism. Our results agree well with those published by the 2dFGRS team, and have the added advantage of producing easy-to-interpret uncorrelated minimum-variance measurements of the galaxy-galaxy, galaxy-velocity and velocity-velocity power spectra in 27 k-bands, with narrow and well-behaved window functions in the range 0.01h/Mpc < k < 0.8h/Mpc. We find no significant detection of baryonic wiggles, although our results are consistent with a standard flat Omega_Lambda=0.7 ``concordance'' model and previous tantalizing hints of baryonic oscillations. We measure the galaxy-matter correlation coefficient r > 0.4 and the redshift-distortion parameter beta=0.49+/-0.16 for r=1 (beta=0.47+/- 0.16 without finger-of-god compression). Since this is an apparent-magnitude limited sample, luminosity-dependent bias may cause a slight red-tilt in the power spectum. A battery of systematic error tests indicate that the survey is not only impressive in size, but also unusually clean, free of systematic errors at the level to which our tests are sensitive. Our measurements and window functions are available at http://www.hep.upenn.edu/~max/2df.html together with the survey mask, radial selection function and uniform subsample of the survey that we have constructed.Comment: Replaced to match accepted MNRAS version, with new radial/angular systematics plot and sigma8 typo corrected. High-res figures, power spectra, windows and our uniform galaxy subsample with mask at http://www.hep.upenn.edu/~max/2df.html or from [email protected]. 26 journal pages, 28 fig

Smoking and intention to quit in deprived areas of Glasgow: is it related to housing improvements and neighbourhood regeneration because of improved mental health?

Background: People living in areas of multiple deprivation are more likely to smoke and less likely to quit smoking. This study examines the effect on smoking and intention to quit smoking for those who have experienced housing improvements (HI) in deprived areas of Glasgow, UK, and investigates whether such effects can be explained by improved mental health. Methods: Quasi-experimental, 2-year longitudinal study, comparing residents’ smoking and intention to quit smoking for HI group (n=545) with non-HI group (n=517), adjusting for baseline (2006) sociodemographic factors and smoking status. SF-12 mental health scores were used to assess mental health, along with self-reported experience of, and General Practitioner (GP) consultations for, anxiety and depression in the last 12 months. Results: There was no relationship between smoking and HI, adjusting for baseline rates (OR=0.97, 95% CI 0.57 to 1.67, p=0.918). We found an association between intention to quit and HI, which remained significant after adjusting for sociodemographics and previous intention to quit (OR 2.16, 95% CI 1.12 to 4.16, p=0.022). We found no consistent evidence that this association was attenuated by improvement in our three mental health measures. Conclusions: Providing residents in disadvantaged areas with better housing may prompt them to consider quitting smoking. However, few people actually quit, indicating that residential improvements or changes to the physical environment may not be sufficient drivers of personal behavioural change. It would make sense to link health services to housing regeneration projects to support changes in health behaviours at a time when environmental change appears to make behavioural change more likely