Edaphic Specialization in Tropical Trees: Physiological Correlates and Responses to Reciprocal Transplantation

Recent research has documented the importance of edaphic factors in determining the habitat associations of tree species in many tropical rain forests, but the underlying mechanisms for edaphic associations are unclear. At Sepilok Forest Reserve, Sabah, Malaysian Borneo, two main soil types derived from sandstone (ridges) and alluvium (valleys) differ in nutrient and water availability and are characterized by forests differing markedly in species composition, structure, and understory light availability. We use both survey and reciprocal transplants to examine physiological adaptations to differences in light, nutrient, and water availability between these soil types, and test for the importance of resource-use efficiency in determining edaphic specialization. Photosynthetic surveys for congeneric and confamilial pairs (one species per soil type) of edaphic specialists and for generalists common to both soil types show that species specializing on sandstone derived soil had lower stomatal conductance at a given assimilation rate than those occurring on alluvial soil and also had greater instantaneous and integrated water-use efficiencies. Foliar dark respiration rates per unit photosynthesis were higher for sandstone ridge than alluvial lowland specialists. We suggest that these higher respiration rates are likely due to increases in photosynthetic enzyme concentrations to compensate for lower internal CO2 concentrations resulting from increased stomatal closure. This is supported by lower photosynthetic nitrogen-use efficiencies in the sandstone ridge specialists. Generalist species had lower water-use efficiencies than sandstone ridge specialists when growing on the drier, sandy ridgetops, but their nitrogen-use efficiencies did not differ from the species specialized to the more resource-rich alluvial valleys. We varied light environment and soil nutrient availability in a reciprocal transplant experiment involving two specialist species from each soil type. Edaphic specialist species, when grown on the soil type for which they were not specialized, were not capable of acclimatory shifts to achieve similar resource-use efficiencies as species specialized to that soil type. We conclude that divergent water-use strategies are an important mechanism underlying differences in edaphic associations and thus contributing to maintenance of high local tree species diversity in Bornean rain forests

Are patterns of fine-scale spatial genetic structure consistent between sites within tropical tree species?

Documenting the scale and intensity of fine-scale spatial genetic structure (FSGS), and the processes that shape it, is relevant to the sustainable management of genetic resources in timber tree species, particularly where logging or fragmentation might disrupt gene flow. In this study we assessed patterns of FSGS in three species of Dipterocarpaceae (Parashorea tomentella, Shorea leprosula and Shorea parvifolia) across four different tropical rain forests in Malaysia using nuclear microsatellite markers. Topographic heterogeneity varied across the sites. We hypothesised that forests with high topographic heterogeneity would display increased FSGS among the adult populations driven by habitat associations. This hypothesis was not supported for S. leprosula and S. parvifolia which displayed little variation in the intensity and scale of FSGS between sites despite substantial variation in topographic heterogeneity. Conversely, the intensity of FSGS for P. tomentella was greater at a more topographically heterogeneous than a homogeneous site, and a significant difference in the overall pattern of FSGS was detected between sites for this species. These results suggest that local patterns of FSGS may in some species be shaped by habitat heterogeneity in addition to limited gene flow by pollen and seed dispersal. Site factors can therefore contribute to the development of FSGS. Confirming consistency in species’ FSGS amongst sites is an important step in managing timber tree genetic diversity as it provides confidence that species specific management recommendations based on species reproductive traits can be applied across a species’ range. Forest managers should take into account the interaction between reproductive traits and site characteristics, its consequences for maintaining forest genetic resources and how this might influence natural regeneration across species if management is to be sustainable

Imaging spectroscopy reveals the effects of topography and logging on the leaf chemistry of tropical forest canopy trees

Logging, pervasive across the lowland tropics, affects millions of hectares of forest, yet its influence on nutrient cycling remains poorly understood. One hypothesis is that logging influences phosphorus (P) cycling, because this scarce nutrient is removed in extracted timber and eroded soil, leading to shifts in ecosystem functioning and community composition. However, testing this is challenging because P varies within landscapes as a function of geology, topography and climate. Superimposed upon these trends are compositional changes in logged forests, with species with more acquisitive traits, characterized by higher foliar P concentrations, more dominant. It is difficult to resolve these patterns using traditional field approaches alone. Here, we use airborne light detection and ranging‐guided hyperspectral imagery to map foliar nutrient (i.e. P, nitrogen [N]) concentrations, calibrated using field measured traits, over 400 km2 of northeastern Borneo, including a landscape‐level disturbance gradient spanning old‐growth to repeatedly logged forests. The maps reveal that canopy foliar P and N concentrations decrease with elevation. These relationships were not identified using traditional field measurements of leaf and soil nutrients. After controlling for topography, canopy foliar nutrient concentrations were lower in logged forest than in old‐growth areas, reflecting decreased nutrient availability. However, foliar nutrient concentrations and specific leaf area were greatest in relatively short patches in logged areas, reflecting a shift in composition to pioneer species with acquisitive traits. N:P ratio increased in logged forest, suggesting reduced soil P availability through disturbance. Through the first landscape scale assessment of how functional leaf traits change in response to logging, we find that differences from old‐growth forest become more pronounced as logged forests increase in stature over time, suggesting exacerbated phosphorus limitation as forests recover

Understanding local patterns of genetic diversity in dipterocarps using a multi-site, multi-species approach: Implications for forest management and restoration

The lowland tropical forests of Southeast Asia are dominated by a single family of canopy and emergent trees, the Dipterocarpaceae. The seeds of dipterocarps are gravity or gyration dispersed. Short distance and limited seed dispersal via these mechanisms result in the aggregation of related individuals and strong fine-scale spatial genetic structure (FSGS). In logged and fragmented forests, where gene flow may be disrupted, tree species with strong FSGS are predicted to exhibit increased inbreeding, which consequently can erode genetic diversity, fitness and might limit the potential for natural regeneration of dipterocarps. Developing a set of indirect operational indicators for FSGS provides a solid basis for informing conservation and management of forest genetic resources in logged forests. Our main objective was to use an information theoretic approach to identify these indicators of FSGS in dipterocarps. We quantify FSGS in 19 dipterocarp species across four forest sites in Malaysian Borneo, India and the Seychelles. We detected FSGS in 15 (79%) of our study species, most of which displayed significant inbreeding. Our results suggest that wood density and flower size offer useful indicators of FSGS. We propose some simple guidelines to allow forest managers to account for FSGS when planning approaches to maintain genetically diverse stands in logged dipterocarp forests. The integration of improved understanding of genetic processes is essential for conserving forest tree genetic resources and ensuring the resilience of logged forests

Evaluating the potential of full-waveform lidar for mapping pan-tropical tree species richness

© 2020 John Wiley & Sons Ltd Aim: Mapping tree species richness across the tropics is of great interest for effective conservation and biodiversity management. In this study, we evaluated the potential of full-waveform lidar data for mapping tree species richness across the tropics by relating measurements of vertical canopy structure, as a proxy for the occupation of vertical niche space, to tree species richness. Location: Tropics. Time period: Present. Major taxa studied: Trees. Methods: First, we evaluated the characteristics of vertical canopy structure across 15 study sites using (simulated) large-footprint full-waveform lidar data (22 m diameter) and related these findings to in-situ tree species information. Then, we developed structure–richness models at the local (within 25–50 ha plots), regional (biogeographical regions) and pan-tropical scale at three spatial resolutions (1.0, 0.25 and 0.0625 ha) using Poisson regression. Results: The results showed a weak structure–richness relationship at the local scale. At the regional scale (within a biogeographical region) a stronger relationship between canopy structure and tree species richness across different tropical forest types was found, for example across Central Africa and in South America [R2 ranging from.44–.56, root mean squared difference as a percentage of the mean (RMSD%) ranging between 23–61%]. Modelling the relationship pan-tropically, across four continents, 39% of the variation in tree species richness could be explained with canopy structure alone (R2 =.39 and RMSD% = 43%, 0.25-ha resolution). Main conclusions: Our results may serve as a basis for the future development of a set of structure–richness models to map high resolution tree species richness using vertical canopy structure information from the Global Ecosystem Dynamics Investigation (GEDI). The value of this effort would be enhanced by access to a larger set of field reference data for all tropical regions. Future research could also support the use of GEDI data in frameworks using environmental and spectral information for modelling tree species richness across the tropics

TRY plant trait database – enhanced coverage and open access

Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

Canopy functional trait variation across Earth’s tropical forests

Tropical forest canopies are the biosphere’s most concentrated atmospheric interface for carbon, water and energy. However, in most Earth System Models, the diverse and heterogeneous tropical forest biome is represented as a largely uniform ecosystem with either a singular or a small number of fixed canopy ecophysiological properties. This situation arises, in part, from a lack of understanding about how and why the functional properties of tropical forest canopies vary geographically. Here, by combining field-collected data from more than 1,800 vegetation plots and tree traits with satellite remote-sensing, terrain, climate and soil data, we predict variation across 13 morphological, structural and chemical functional traits of trees, and use this to compute and map the functional diversity of tropical forests. Our findings reveal that the tropical Americas, Africa and Asia tend to occupy different portions of the total functional trait space available across tropical forests. Tropical American forests are predicted to have 40% greater functional richness than tropical African and Asian forests. Meanwhile, African forests have the highest functional divergence—32% and 7% higher than that of tropical American and Asian forests, respectively. An uncertainty analysis highlights priority regions for further data collection, which would refine and improve these maps. Our predictions represent a ground-based and remotely enabled global analysis of how and why the functional traits of tropical forest canopies vary across space

Thresholds for adding degraded tropical forest to the conservation estate

Logged and disturbed forests are often viewed as degraded and depauperate environments compared with primary forest. However, they are dynamic ecosystems1 that provide refugia for large amounts of biodiversity2,3, so we cannot afford to underestimate their conservation value4. Here we present empirically defined thresholds for categorizing the conservation value of logged forests, using one of the most comprehensive assessments of taxon responses to habitat degradation in any tropical forest environment. We analysed the impact of logging intensity on the individual occurrence patterns of 1,681 taxa belonging to 86 taxonomic orders and 126 functional groups in Sabah, Malaysia. Our results demonstrate the existence of two conservation-relevant thresholds. First, lightly logged forests (68%) of their biomass removed, and these are likely to require more expensive measures to recover their biodiversity value. Overall, our data confirm that primary forests are irreplaceable5, but they also reinforce the message that logged forests retain considerable conservation value that should not be overlooked