Effect of angular opening on the dynamics of relativistic hydro jets

Context. Relativistic jets emerging from AGN cores transfer energy from the core to their surrounding ISM/IGM. Because jets are observed to have finite opening angles, one needs to quantify the role of conical versus cylindrical jet propagation in this energy transfer. Aims. We use FR-II AGN jets parameter with finite opening angles. We study the effect of the variation of the opening angle on the dynamics and energy transfer of the jet. We also point out how the characteristics of this external medium, such as its density profile, play a role in the dynamics. Methods. This study exploits our parallel AMR code MPI-AMRVAC with its special relativistic hydrodynamic model, incorporating an equation of state with varying effective polytropic index. We studied mildly under-dense jets up to opening angles of 10 degrees, at Lorentz factors of about 10, inspired by observations. Instantaneous quantification of the various ISM volumes and their energy content allows one to quantify the role of mixing versus shock-heated cocoon regions over the time intervals. Results. We show that a wider opening angle jet results in a faster deceleration of the jet and leads to a wider cocoon dominated by Kelvin-Helmholtz and Rayleigh-Taylor instabilities. The energy transfer mainly occurs in the shocked ISM region by both the frontal bow shock and cocoon-traversing shock waves, in a roughly 3 to 1 ratio to the energy transfer of the mixing zone, for a 5 degree opening angle jet. A rarefaction wave induces a dynamically formed layered structure of the jet beam. Conclusions. Finite opening angle jets can efficiently transfer significant fractions (25 % up to 70 %) of their injected energy over a growing region of shocked ISM matter. The role of the ISM stratification is prominent for determining the overall volume that is affected by relativistic jet injection

Circular geodesics and thick tori around rotating boson stars

Accretion disks play an important role in the evolution of their relativistic inner compact objects. The emergence of a new generation of interferometers will allow to resolve these accretion disks and provide more information about the properties of the central gravitating object. Due to this instrumental leap forward it is crucial to investigate the accretion disk physics near various types of inner compact objects now to deduce later constraints on the central objects from observations. A possible candidate for the inner object is the boson star. Here, we will try to analyze the differences between accretion structures surrounding boson stars and black holes. We aim at analysing the physics of circular geodesics around boson stars and study simple thick accretion tori (so-called Polish doughnuts) in the vicinity of these stars. We realize a detailed study of the properties of circular geodesics around boson stars. We then perform a parameter study of thick tori with constant angular momentum surrounding boson stars. This is done using the boson star models computed by a code constructed with the spectral solver library KADATH. We demonstrate that all the circular stable orbits are bound. In the case of a constant angular momentum torus, a cusp in the torus surface exists only for boson stars with a strong gravitational scalar field. Moreover, for each inner radius of the disk, the allowed specific angular momentum values lie within a constrained range which depends on the boson star considered. We show that the accretion tori around boson stars have different characteristics than in the vicinity of a black hole. With future instruments it could be possible to use these differences to constrain the nature of compact objects.Comment: Accepted for publication in CQ

Nuclear fusions contribute to polyploidization of the gigantic nuclei in the chalazal endosperm of Arabidopsis

Somatic polyploidization is recognized as a means to increase gene expression levels in highly active metabolic cells. The most common mechanisms are endoreplication, endomitosis and cell fusion. In animals and plants the nuclei of multinucleate cells are usually prevented from fusing. Here, we report that the nuclei from the syncytial cyst of the chalazal endosperm of Arabidopsis thaliana (L.) Heynh. are polyploid with some intermediate ploidy levels that cannot be attributed to endoreplication, suggesting nuclear fusion. Analysis of isolated nuclei, together with fluorescent in situ hybridization (FISH), revealed that nuclei from the chalazal endosperm are two or three times bigger than the nuclei from the peripheral endosperm and have a corresponding increase in ploidy. Together with the consistent observation of adjoined nuclei, we propose that nuclear fusion contributes, at least in part, to the process of polyploidization in the chalazal endosperm. Confocal analysis of intact seeds further suggested that free nuclei from the peripheral endosperm get incorporated into the chalazal cyst and likely participate in nuclear fusion

Genomic Origin and Organization of the Allopolyploid Primula egaliksensis Investigated by in situ Hybridization

Background and Aims Earlier studies have suggested that the tetraploid Primula egaliksensis (2n = 40) originated from hybridization between the diploids P. mistassinica (2n = 18) and P. nutans (2n = 22), which were hypothesized to be the maternal and paternal parent, respectively. The present paper is aimed at verifying the hybrid nature of P. egaliksensis using cytogenetic tools, and to investigate the extent to which the parental genomes have undergone genomic reorganization. Methods Genomic in situ hybridization (GISH) and fluorescent in situ hybridization (FISH) with ribosomal DNA (rDNA) probes, together with sequencing of the internal transcribed spacer (ITS) region of the rDNA, were used to identify the origin of P. egaliksensis and to explore its genomic organization, particularly at rDNA loci. Key Results GISH showed that P. egaliksensis inherited all chromosomes from P. mistassinica and P. nutans and did not reveal major intergenomic rearrangements between the parental genomes (e.g. interchromosomal translocations). However, karyological comparisons and FISH experiments suggested small-scale rearrangements, particularly at rDNA sites. Primula egaliksensis lacked the ITS-bearing heterochromatic knobs characteristic of the maternal parent P. mistassinica and maintained only the rDNA loci of P. nutans. These results corroborated sequence data indicating that most ITS sequences of P. egaliksensis were of the paternal repeat type. Conclusions The lack of major rearrangements may be a consequence of the considerable genetic divergence between the putative parents, while the rapid elimination of the ITS repeats from the maternal progenitor may be explained by the subterminal location of ITS loci or a potential role of nucleolar dominance in chromosome stabilization. These small-scale rearrangements may be indicative of genome diploidization, but further investigations are needed to confirm this assumptio

PHO1 Exports Phosphate from the Chalazal Seed Coat to the Embryo in Developing Arabidopsis Seeds.

Seed production requires the transfer of nutrients from the maternal seed coat to the filial endosperm and embryo. Because seed coat and filial tissues are symplasmically isolated, nutrients arriving in the seed coat via the phloem must be exported to the apoplast before reaching the embryo. Proteins implicated in the transfer of inorganic phosphate (Pi) from the seed coat to the embryo are unknown despite seed P content being an important agronomic trait. Here we show that the Arabidopsis Pi exporters PHO1 and PHOH1 are expressed in the chalazal seed coat (CZSC) of developing seeds. PHO1 is additionally expressed in developing ovules. Phosphorus (P) content and Pi flux between the seed coat and embryo were analyzed in seeds from grafts between WT roots and scions from either pho1, phoh1, or the pho1 phoh1 double mutant. Whereas P content and distribution between the seed coat and embryo in fully mature dry seeds of these mutants are similar to the WT, at the mature green stage of seed development the seed coat of the pho1 and pho1 phoh1 mutants, but not of the phoh1 mutant, retains approximately 2-fold more P than its WT control. Expression of PHO1 under a CZSC-specific promoter complemented the seed P distribution phenotype of the pho1 phoh1 double mutant. CZSC-specific down-expression of PHO1 also recapitulated the seed P distribution phenotype of pho1. Together, these experiments show that PHO1 expression in the CZSC is important for the transfer of P from the seed coat to the embryo in developing seeds

Intrachromosomal excision of a hybrid Ds element induces large genomic deletions in Arabidopsis

Transposon activity is known to cause chromosome rearrangements in the host genome. Surprisingly, extremely little is known about Dissociation (Ds)-induced chromosome rearrangements in Arabidopsis, where Ds is intensively used for insertional mutagenesis. Here, we describe three Arabidopsis mutants with reduced fertility and propose that excision of a hybrid Ds element induced a large genomic deletion flanking Ds. In the mutants anat and haumea, the deletion mechanism consists of a local Ds transposition from replicated into unreplicated DNA followed by Ds excision, where one end of the newly transposed element and one end of the Ds transposon at the donor site served as substrate for transposase. Excision of this hybrid element reminiscent of a macrotransposon leads to loss of the chromosomal piece located between the two ends, including one full Ds element and the flanking genomic sequence. This mechanism was found to be responsible for several other deletions and occurs at a genetically trackable frequency. Thus, it could be applied to efficiently generate deletions of various sizes in the vicinity of any existing Ds element present in the genome. In the mutant tons missing, a mechanism that involves endogenous repetitive sequences caused a large flanking deletion at a position unlinked to the starter locus. Our study of Ds transposition in Arabidopsis revealed previously undescribed mechanisms that lead to large genomic deletions flanking Ds elements, which may contribute to genome dynamics and evolution