Development of a multistage laser frequency stabilization for an interferometric gravitational-wave detector

Laser frequency stabilization is essential for interferometric gravitational-wave detectors to attain their target sensitivity. We have designed a multistage laser frequency stabilization system which has been applied in the development of the TAMA 300 gravitational-wave detector in Japan. The control topology consisting of two cascaded loops were employed to secure high feedback gain and reliable detector operation and thus allow the best frequency stability and uninterrupted long-term observation. We achieved simultaneously a frequency stability of 5 × 10^(−5) Hz/√HZ , and a common-mode rejection ratio (which reduces the coupling of frequency noise to spurious signals in the detector) of 37 dB. The developed system enabled us to operate TAMA 300 with sufficient sensitivity and stability that it had the potential to register gravitational-wave events. The system was confirmed to be suitable for a gravitational-wave detector from the observation run of TAMA 300

Field theory models for tachyon and gauge field string dynamics

In hep-th/0008227, the unstable lump solution of \phi^3 theory was shown to have a spectrum governed by the solvable Schroedinger equation with the \ell=3 reflectionless potential and was used as a model for tachyon condensation in string theory. In this paper we study in detail an \ell\to \infty scalar field theory model whose lump solution mimics remarkably the string theory setup: the original field theory tachyon and the lump tachyon have the same mass, the spectrum of the lump consists of equally spaced infinite levels, there is no continuous spectrum, and nothing survives after tachyon condensation. We also find exact solutions for lumps with codimension \ge 2, and show that that their tensions satisfy (1/(2\pi)) (T_p/ T_{p+1})=e/(\sqrt{2\pi}) \approx 1.08. We incorporate gauge fixed couplings to a U(1) gauge field which preserve solvability and result in massless gauge fields on the lump.Comment: latex, 21 pages, 3 figures. Added references to reflectionless potentials, minor typos corrected, uniform use of (-, +, +, ..., +) signatur

Systematic experimental exploration of bifurcations with non-invasive control

We present a general method for systematically investigating the dynamics and bifurcations of a physical nonlinear experiment. In particular, we show how the odd-number limitation inherent in popular non-invasive control schemes, such as (Pyragas) time-delayed or washout-filtered feedback control, can be overcome for tracking equilibria or forced periodic orbits in experiments. To demonstrate the use of our non-invasive control, we trace out experimentally the resonance surface of a periodically forced mechanical nonlinear oscillator near the onset of instability, around two saddle-node bifurcations (folds) and a cusp bifurcation.Comment: revised and extended version (8 pages, 7 figures

Effects of strand and directional asymmetry on base-base coupling and charge transfer in double-helical DNA

Mechanistic models of charge transfer (CT) in macromolecules often focus on CT energetics and distance as the chief parameters governing CT rates and efficiencies. However, in DNA, features unique to the DNA molecule, in particular, the structure and dynamics of the DNA base stack, also have a dramatic impact on CT. Here we probe the influence of subtle structural variations on base-base CT within a DNA duplex by examining photoinduced quenching of 2-aminopurine (Ap) as a result of hole transfer (HT) to guanine (G). Photoexcited Ap is used as a dual reporter of variations in base stacking and CT efficiency. Significantly, the unique features of DNA, including the strandedness and directional asymmetry of the double helix, play a defining role in CT efficiency. For an (AT)(n) bridge, the orientation of the base pairs is critical; the yield of intrastrand HT is markedly higher through (A)n compared with (T)(n) bridges, whereas HT via intrastrand pathways is more efficient than through interstrand pathways. Remarkably, for reactions through the same DNA bridge, over the same distance, and with the same driving force, HT from photoexcited Ap to G in the 5' to 3' direction is more efficient and less dependent on distance than HT from 3' to 5'. We attribute these differences in HT efficiency to variations in base-base coupling within the DNA assemblies. Thus base-base coupling is a critical parameter in DNA CT and strongly depends on subtle structural nuances of duplex DNA

Pentatomidae of Arkansas

A total of 30 genera and 53 species and subspecies of Pentatomidae are reported as occurring or possibly occurring in Arkansas. Fifty species and subspecies contained in 29 genera were collected or recorded from previously collected material. Based on distributional records in the literature, three additional species and one genus are listed as probably occurring in Arkansas. County and seasonal records are reported for each taxon

Scaffolder - Software for Reproducible Genome Scaffolding.

Background: Assembly of short-read sequencing data can result in a fragmented non-contiguous series of genomic sequences. Therefore a common step in a genome project is to join neighboring sequence regions together and fill gaps in the assembly using additional sequences. This scaffolding step, however, is non-trivial and requires manually editing large blocks of nucleotide sequence. Joining these sequences together also hides the source of each region in the final genome sequence. Taken together, these considerations may make reproducing or editing an existing genome build difficult.

Methods: The software outlined here, “Scaffolder,” is implemented in the Ruby programming language and can be installed via the RubyGems software management system. Genome scaffolds are defined using YAML - a data format, which is both human and machine-readable. Command line binaries and extensive documentation are available.

Results: This software allows a genome build to be defined in terms of the constituent sequences using a relatively simple syntax to define the scaffold. This syntax further allows unknown regions to be defined, and adds additional sequences to fill gaps in the scaffold. Defining the genome construction in a file makes the scaffolding process reproducible and easier to edit compared with FASTA nucleotide sequence.

Conclusions: Scaffolder is easy-to-use genome scaffolding software. This tool promotes reproducibility and continuous development in a genome project. Scaffolder can be found at http://next.gs

The Fishes of Maryland

Fish, from both a commercial and a sporting standpoint. Based on fishes collected in Maryland only. A general treatise on fishes, setting forth the species, describing them and telling of their distribution, habits and other pertinent facts such as adaptations and coloring. Includes marine, freshwater littoral fishes. (PDF contains 120 pages

Nucleon-Nucleon Interactions from Dispersion Relations: Coupled Partial Waves

We consider nucleon-nucleon interactions from chiral effective field theory applying the N/D method. The case of coupled partial waves is now treated, extending Ref. [1] where the uncoupled case was studied. As a result three N/D elastic-like equations have to be solved for every set of three independent partial waves coupled. As in the previous reference the input for this method is the discontinuity along the left-hand cut of the nucleon-nucleon partial wave amplitudes. It can be calculated perturbatively in chiral perturbation theory because it involves only irreducible two-nucleon intermediate states. We apply here our method to the leading order result consisting of one-pion exchange as the source for the discontinuity along the left-hand cut. The linear integral equations for the N/D method must be solved in the presence of L - 1 constraints, with L the orbital angular momentum, in order to satisfy the proper threshold behavior for L>= 2. We dedicate special attention to satisfy the requirements of unitarity in coupled channels. We also focus on the specific issue of the deuteron pole position in the 3S1-3D1 scattering. Our final amplitudes are based on dispersion relations and chiral effective field theory, being independent of any explicit regulator. They are amenable to a systematic improvement order by order in the chiral expansion.Comment: 11 pages. Extends the work of uncoupled partial waves of M. Albaladejo and J. A. Oller, Phys. Rev. C 84, 054009 (2011) to the case of coupled partial waves. This version matches the published version. Discussion about the deuteron enlarged. Some references adde

Local and Global Casimir Energies for a Semitransparent Cylindrical Shell

The local Casimir energy density and the global Casimir energy for a massless scalar field associated with a $\lambda\delta$-function potential in a 3+1 dimensional circular cylindrical geometry are considered. The global energy is examined for both weak and strong coupling, the latter being the well-studied Dirichlet cylinder case. For weak-coupling,through $\mathcal{O}(\lambda^2)$, the total energy is shown to vanish by both analytic and numerical arguments, based both on Green's-function and zeta-function techniques. Divergences occurring in the calculation are shown to be absorbable by renormalization of physical parameters of the model. The global energy may be obtained by integrating the local energy density only when the latter is supplemented by an energy term residing precisely on the surface of the cylinder. The latter is identified as the integrated local energy density of the cylindrical shell when the latter is physically expanded to have finite thickness. Inside and outside the delta-function shell, the local energy density diverges as the surface of the shell is approached; the divergence is weakest when the conformal stress tensor is used to define the energy density. A real global divergence first occurs in $\mathcal{O}(\lambda^3)$, as anticipated, but the proof is supplied here for the first time; this divergence is entirely associated with the surface energy, and does {\em not} reflect divergences in the local energy density as the surface is approached.Comment: 28 pages, REVTeX, no figures. Appendix added on perturbative divergence