Sea surface temperature distribution in the Azores region. Part II: space-time variability and underlying mechanisms.

Following the methodology described in the first part of the article, monthly Sea Surface Temperature (SST) distribution and variability in the Azores region was studied for the years 2001-2002. The mean SST field shows colder waters in the vicinity of big topographic features − near the Mid-Atlantic Ridge, between the Central and Eastern groups of the Azores islands and near the Azores and Princess Alice banks, with maximum temperature differences reaching 1ºC. Some of the anomalies can result from intensification of moving cyclonic waves/vortexes over bottom rises. The importance of wave/vortex induced heat flux from the Azores front to the Azores islands is discussed. Position of two eastward flows to the north and south of the Azores islands was investigated with the SST data. We suggest that the observed seasonal variability of the SST data greatly depends on general circulation seasonal changes in this region

Accuracy assessment of primary production models with and without photoinhibition using Ocean Colour Climate Change Initiative data in the North East Atlantic Ocean.

The accuracy of three satellite models of primary production (PP) of varying complexity was assessed against 95 in situ 14C uptake measurements from the North East Atlantic Ocean (NEA). The models were run using the European Space Agency (ESA), Ocean Colour Climate Change Initiative (OC-CCI) version 3.0 data. The objectives of the study were to determine which is the most accurate PP model for the region in different provinces and seasons, what is the accuracy of the models using both high (daily) and low (eight day) temporal resolution OC-CCI data, and whether the performance of the models is improved by implementing a photoinhibition function? The Platt-Sathyendranath primary production model (PPPSM) was the most accurate over all NEA provinces and, specifically, in the Atlantic Arctic province (ARCT) and North Atlantic Drift (NADR) provinces. The implementation of a photoinhibition function in the PPPSM reduced its accuracy, especially at lower range PP. The Vertical Generalized Production Model-VGPM (PPVGPM) tended to over-estimate PP, especially in summer and in the NADR. The accuracy of PPVGPM improved with the implementation of a photoinhibition function in summer. The absorption model of primary production (PPAph), with and without photoinhibition, was the least accurate model for the NEA. Mapped images of each model showed that the PPVGPM was 150% higher in the NADR compared to PPPSM. In the North Atlantic Subtropical Gyre (NAST) province, PPAph was 355% higher than PPPSM, whereas PPVGPM was 215% higher. A sensitivity analysis indicated that chlorophyll-a (Chl a), or the absorption of phytoplankton, at 443 nm (aph (443)) caused the largest error in the estimation of PP, followed by the photosynthetic rate terms and then the irradiance functions used for each model

Sea surface temperature distribution in the Azores region. Part I: AVHRR imagery and in situ data processing.

Sixteen months of 1.1 km resolution NOAA-12, -14, and -16 data for the Azores region are investigated. Advanced Very High Resolution Radiometer (AVHRR) derived sea surface temperature (SST) is compared to an extensive in situ temperature measurement database, mainly constituted during fisheries campaigns. This comparison shows that SST maps include numerous pixels with temperature values below the range observed for the Azores. Low temperatures are attributed in literature to pixel contamination by cloud neighbouring and these are usually removed by eroding pixels around clouds. Results of this study show that running an erosion filter removes only two thirds of the contaminated pixels. Remnant clouds are filtered inputting threshold values to SST 8-day temperature histograms. Based on a comparison of the SST values derived on an image-by-image basis, it is also demonstrated that differences among the sensors are lower than the measurement accuracy, whilst, on the contrary, nighttime and daytime SST distributions are statistically different. Based on monthly and 15-day average computations at nighttime, AVHRR-derived SST distribution in the Azores and associated dominant space and time scales are proposed in the second part of this paper (SST distribution in the Azores region. Part II: Space and time variability and its relation to North Atlantic Oscillation)

Sea surface temperature distribution in the Azores region. Part I: AVHRR imagery and in situ data processing.

Sixteen months of 1.1 km resolution NOAA-12, -14, and -16 data for the Azores region are investigated. Advanced Very High Resolution Radiometer (AVHRR) derived sea surface temperature (SST) is compared to an extensive in situ temperature measurement database, mainly constituted during fisheries campaigns. This comparison shows that SST maps include numerous pixels with temperature values below the range observed for the Azores. Low temperatures are attributed in literature to pixel contamination by cloud neighbouring and these are usually removed by eroding pixels around clouds. Results of this study show that running an erosion filter removes only two thirds of the contaminated pixels. Remnant clouds are filtered inputting threshold values to SST 8-day temperature histograms. Based on a comparison of the SST values derived on an image-by-image basis, it is also demonstrated that differences among the sensors are lower than the measurement accuracy, whilst, on the contrary, nighttime and daytime SST distributions are statistically different. Based on monthly and 15-day average computations at nighttime, AVHRR-derived SST distribution in the Azores and associated dominant space and time scales are proposed in the second part of this paper (SST distribution in the Azores region. Part II: Space and time variability and its relation to North Atlantic Oscillation)

Biogeochemical role of subsurface coherent eddies in the ocean: Tracer cannonballs, hypoxic storms, and microbial stewpots?

Subsurface coherent eddies are well-known features of ocean circulation, but the sparsity of observations prevents an assessment of their importance for biogeochemistry. Here, we use a global eddying (0.1° ) ocean-biogeochemical model to carry out a census of subsurface coherent eddies originating from eastern boundary upwelling systems (EBUS), and quantify their biogeochemical effects as they propagate westward into the subtropical gyres. While most eddies exist for a few months, moving over distances of 100s of km, a small fraction (< 5%) of long-lived eddies propagates over distances greater than 1000km, carrying the oxygen-poor and nutrient-rich signature of EBUS into the gyre interiors. In the Pacific, transport by subsurface coherent eddies accounts for roughly 10% of the offshore transport of oxygen and nutrients in pycnocline waters. This "leakage" of subsurface waters can be a significant fraction of the transport by nutrient-rich poleward undercurrents, and may contribute to the well-known reduction of productivity by eddies in EBUS. Furthermore, at the density layer of their cores, eddies decrease climatological oxygen locally by close to 10%, thereby expanding oxygen minimum zones. Finally, eddies represent low-oxygen extreme events in otherwise oxygenated waters, increasing the area of hypoxic waters by several percent and producing dramatic short-term changes that may play an important ecological role. Capturing these non-local effects in global climate models, which typically include non-eddying oceans, would require dedicated parameterizations

Role of Greenland Freshwater Anomaly in the Recent Freshening of the Subpolar North Atlantic

The cumulative Greenland freshwater flux anomaly has exceeded 5,000 km3 since the 1990s. The volume of this surplus freshwater is expected to cause substantial freshening in the North Atlantic. Analysis of hydrographic observations in the subpolar seas reveals freshening signals in the 2010s. The sources of this freshening are yet to be determined. In this study, the relationship between the surplus Greenland freshwater flux and this freshening is tested by analyzing the propagation of the Greenland freshwater anomaly and its impact on salinity in the subpolar North Atlantic based on observational data and numerical experiments with and without the Greenland runoff. A passive tracer is continuously released during the simulations at freshwater sources along the coast of Greenland to track the Greenland freshwater anomaly. Tracer budget analysis shows that 44% of the volume of the Greenland freshwater anomaly is retained in the subpolar North Atlantic by the end of the simulation. This volume is sufficient to cause strong freshening in the subpolar seas if it stays in the upper 50–100 m. However, in the model the anomaly is mixed down to several hundred meters of the water column resulting in smaller magnitudes of freshening compared to the observations. Therefore, the simulations suggest that the accelerated Greenland melting would not be sufficient to cause the observed freshening in the subpolar seas and other sources of freshwater have contributed to the freshening. Impacts on salinity in the subpolar seas of the freshwater transport through Fram Strait and precipitation are discussed.© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Dukhovskoy, D. S., Yashayaev, I., Proshutinsky, A., Bamber, J. L., Bashmachnikov, I. L., Chassignet, E. P., Lee, C. M., & Tedstone, A. J. Role of Greenland freshwater anomaly in the recent freshening of the subpolar North Atlantic. Journal of Geophysical Research-Oceans, 124(5), (2019): 3333-3360, doi:10.1029/2018JC014686

Characterizing phytoplankton biomass seasonal cycles in two NE Atlantic coastal bays

The seasonal and interannual variability of chlorophyll a was studied between 2008 and 2016 in two coastal bays located in the northeastern limit of the Iberia/Canary upwelling ecosystem. The work aims (i) to understand if small latitudinal distances and/or coastline orientation can promote different chlorophyll a seasonal cycles; and (ii) to investigate if different meteorological and oceanographic variables can explain the differences observed on seasonal cycles. Results indicate three main biological seasons with different patterns in the two studied bays. A uni-modal pattern with a short early summer maximum and relatively low chlorophyll a concentration characterized the westernmost sector of the South coast, while a uni-modal pattern characterized by high biomass over a long period, slightly higher in spring than in summer, and high chlorophyll a concentration characterized the central West coast. Comparisons made between satellite estimates of chlorophyll a and in situ data in one of the bays revealed some important differences, namely the overestimation of concentrations and the anticipation of the beginning and end time of the productive period by satellite. Cross-correlation analyses were performed for phytoplankton biomass and different meteorological and oceanographic variables (SST, PAR, UI, MLD and precipitation) using different time lags to identify the drivers that promote the growth and the high levels of phytoplankton biomass. PAR contributed to the increase of phytoplankton biomass observed during winter/midspring, while upwelling and SST were the main explanatory drivers to the high Chl-a concentrations observed in late-spring/summer. Zonal transport was the variable that contributed most to the phytoplankton biomass during late-spring/summer in Lisbon Bay, while the meridional transport combined with SST was more important in Lagos Bay.FCT: SFRH/BD/52560/2014/ IPMA-BCC-2016-35/ UIDB/04292/2020/ UID/Multi/04326/2020/ UID/MAT/04561/2020 LISBOA-01-0145FEDER-031265 IPMA: MAR2020PO2M01-1490 Pinfo:eu-repo/semantics/publishedVersio

Is There a Seamount Effect on Microbial Community Structure and Biomass? The Case Study of Seine and Sedlo Seamounts (Northeast Atlantic)

Seamounts are considered to be “hotspots” of marine life but, their role in oceans primary productivity is still under discussion. We have studied the microbial community structure and biomass of the epipelagic zone (0–150 m) at two northeast Atlantic seamounts (Seine and Sedlo) and compared those with the surrounding ocean. Results from two cruises to Sedlo and three to Seine are presented. Main results show large temporal and spatial microbial community variability on both seamounts. Both Seine and Sedlo heterotrophic community (abundance and biomass) dominate during winter and summer months, representing 75% (Sedlo, July) to 86% (Seine, November) of the total plankton biomass. In Seine, during springtime the contribution to total plankton biomass is similar (47% autotrophic and 53% heterotrophic). Both seamounts present an autotrophic community structure dominated by small cells (nano and picophytoplankton). It is also during spring that a relatively important contribution (26%) of large cells to total autotrophic biomass is found. In some cases, a “seamount effect” is observed on Seine and Sedlo microbial community structure and biomass. In Seine this is only observed during spring through enhancement of large autotrophic cells at the summit and seamount stations. In Sedlo, and despite the observed low biomasses, some clear peaks of picoplankton at the summit or at stations within the seamount area are also observed during summer. Our results suggest that the dominance of heterotrophs is presumably related to the trapping effect of organic matter by seamounts. Nevertheless, the complex circulation around both seamounts with the presence of different sources of mesoscale variability (e.g. presence of meddies, intrusion of African upwelling water) may have contributed to the different patterns of distribution, abundances and also changes observed in the microbial community

Overview: Recent advances in the understanding of the northern Eurasian environments and of the urban air quality in China – a Pan-Eurasian Experiment (PEEX) programme perspective

The Pan-Eurasian Experiment (PEEX) Science Plan, released in 2015, addressed a need for a holistic system understanding and outlined the most urgent research needs for the rapidly changing Arctic-boreal region. Air quality in China, together with the long-range transport of atmospheric pollutants, was also indicated as one of the most crucial topics of the research agenda. These two geographical regions, the northern Eurasian Arctic-boreal region and China, especially the megacities in China, were identified as a "PEEX region". It is also important to recognize that the PEEX geographical region is an area where science-based policy actions would have significant impacts on the global climate. This paper summarizes results obtained during the last 5 years in the northern Eurasian region, together with recent observations of the air quality in the urban environments in China, in the context of the PEEX programme. The main regions of interest are the Russian Arctic, northern Eurasian boreal forests (Siberia) and peatlands, and the megacities in China. We frame our analysis against research themes introduced in the PEEX Science Plan in 2015. We summarize recent progress towards an enhanced holistic understanding of the land-atmosphere-ocean systems feedbacks. We conclude that although the scientific knowledge in these regions has increased, the new results are in many cases insufficient, and there are still gaps in our understanding of large-scale climate-Earth surface interactions and feedbacks. This arises from limitations in research infrastructures, especially the lack of coordinated, continuous and comprehensive in situ observations of the study region as well as integrative data analyses, hindering a comprehensive system analysis. The fast-changing environment and ecosystem changes driven by climate change, socio-economic activities like the China Silk Road Initiative, and the global trends like urbanization further complicate such analyses. We recognize new topics with an increasing importance in the near future, especially "the enhancing biological sequestration capacity of greenhouse gases into forests and soils to mitigate climate change" and the "socio-economic development to tackle air quality issues".Peer reviewe