Early and Middle Pleistocene Faunal and Hominins Dispersals through Southwestern Asia

This review summarizes the paleoecology of the Early and Middle Pleistocene of southwestern Asia, based on both flora and fauna, retrieved from a series of ‘windows’ provided by the excavated sites. The incomplete chrono-stratigraphy of this vast region does not allow to accept the direct chronological correlation between the available sites and events of faunal and hominin dispersals from Africa. It also demonstrates that hominins survived in a mixed landscape of open parkland with forested surrounding hills. In addition, the prevailing environmental conditions are not sufficient to explain successful adaptations to new ecological niches away from the African savanna of the bearers of ‘core and flake’ and the Acheulian industries, The differences in knapping and secondary shaping of stone artifacts probably reflect the learned traditions of different groups of hominins. The current distribution of lithic industries across Eurasia is undoubtedly incomplete due to lack of cultural continuities as well as paucity of field research in several sub-regions. This observation supports the contention that what we view as a constant stream of migrants was actually interrupted many times. The continuous occupation of southwestern Asia by the makers of the Acheulian is in contrast with neighboring regions such as the Iranian plateau and Eastern Europe. A more complex model is required to explain the recorded Eurasian archaeological–cultural mosaic.Anthropolog

Using exclusion rate to unify niche and neutral perspectives on coexistence

The competitive exclusion principle is one of the most influential concepts in ecology. The classical formulation suggests a correlation between competitor species similarity and competition severity, leading to rapid competitive exclusion where species are very similar; yet neutral models show that identical species can persist in competition for long periods. Here, we resolve the conflict by examining two components of similarity – niche overlap and competitive similarity – and modeling the effects of each on exclusion rate (defined as the inverse of time to exclusion). Studying exclusion rate, rather than the traditional focus on binary outcomes (coexistence vs exclusion), allows us to examine classical niche and neutral perspectives using the same currency. High niche overlap speeds exclusion, but high similarity in competitive ability slows it. These predictions are confirmed by a well-known model of two species competing for two resources. Under ecologically plausible scenarios of correlation between these two factors, the strongest exclusion rates may be among moderately similar species, while very similar and highly dissimilar competitors have very low exclusion rates. Adding even small amounts of demographic stochasticity to the model blurs the line between deterministic and probabilistic coexistence still further. Thus, focusing on exclusion rate, instead of on the binary outcome of coexistence versus exclusion, allows a variety of outcomes to result from competitive interactions. This approach may help explain species coexistence in diverse competitive communities and raises novel issues for future work

Using palynology to re-assess the Dead Sea laminated sediments – indeed varves?

Lacustrine laminated sediments are often varves representing annual rhythmic deposition. The Dead Sea high-stand laminated sections consist of mm-scale alternating detrital and authigenic aragonite laminae. Previous studies assumed these laminae were varves deposited seasonally. However, this assumption has never been robustly validated. Here we report an examination of the seasonal deposition of detrital-aragonite couplets from two well-known Late Holocene laminated sections at the Ze’elim fan-delta using palynology and grain-size distribution analyses. These analyses are complemented by the study of contemporary flash-flood samples and multivariate statistical analysis. Because transport affects the pollen preservation state, well–preserved (mostly) air-borne transported pollen was analysed separately from badly-preserved pollen and fungal spores, which are more indicative of water transport and reworking from soils. Our results indicate that (i) both detrital and aragonite laminae were deposited during the rainy season; (ii) aragonite laminae have significantly lower reworked and fungal spore concentrations than detrital and flash-flood samples; and (iii) detrital laminae are composed of recycling of local and distal sources, with coarser particles that were initially deposited in the Dead Sea watershed and later transported via run-off to the lake. This is in line with previous carbon balance studies that showed that aragonite precipitation occurs after the massive input of TCO2 associated with run-off episodes. Consequently, at least for the Holocene Ze’elim Formation, laminated sediments cannot be considered as varves. Older Quaternary laminated sequences should be re-evaluated

Shared environmental responses drive co-occurrence patterns in river bird communities

Positive or negative patterns of co-occurrence might imply an influence of biotic interactions on community structure. However, species may co-occur simply because of shared environmental responses. Here, we apply two complementary modelling methodologies - a probabilistic model of significant pairwise associations and a hierarchical multivariate probit regression model - to (i) attribute co-occurrence patterns in 100 river bird communities to either shared environmental responses or to other ecological mechanisms such as interaction with heterospecifics, and (ii) examine the strength of evidence for four alternative models of community structure. Species co-occurred more often than would be expected by random community assembly and the species composition of bird communities was highly structured. Co-occurrence patterns were primarily explained by shared environmental responses; species’ responses to the environmental variables were highly divergent, with both strong positive and negative environmental correlations occurring. We found limited evidence for behaviour-driven assemblage patterns in bird communities at a large spatial scale, although statistically significant positive associations amongst some species suggested the operation of facilitative mechanisms such as heterospecific attraction. This lends support to an environmental filtering model of community assembly as being the principle mechanism shaping river bird community structure. Consequently, species interactions may be reduced to an ancillary role in some avifaunal communities, meaning if shared environmental responses are not quantified studies of co-occurrence may overestimate the role of species interactions in shaping community structure

BioTIME: A database of biodiversity time series for the Anthropocene.

MotivationThe BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables includedThe database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grainBioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).Time period and grainBioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurementBioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.Software format.csv and .SQL

Ecological pleiotropy and indirect effects alter the potential for evolutionary rescue

Invading predators can negatively affect naïve prey populations due to a lack of evolved defenses. Many species therefore may be at risk of extinction due to overexploitation by exotic predators. Yet the strong selective effect of predation might drive evolution of imperiled prey toward more resistant forms, potentially allowing the prey to persist. We evaluated the potential for evolutionary rescue in an imperiled prey using Gillespie eco‐evolutionary models (GEMs). We focused on a system parameterized for protists where changes in prey body size may influence intrinsic rate of population growth, space clearance rate (initial slope of the functional response), and the energetic benefit to predators. Our results show that the likelihood of rescue depends on (a) whether multiple parameters connected to the same evolving trait (i.e., ecological pleiotropy) combine to magnify selection, (b) whether the evolving trait causes negative indirect effects on the predator population by altering the energy gain per prey, (c) whether heritable trait variation is sufficient to foster rapid evolution, and (d) whether prey abundances are stable enough to avoid very rapid extinction. We also show that when evolution fosters rescue by increasing the prey equilibrium abundance, invasive predator populations also can be rescued, potentially leading to additional negative effects on other species. Thus, ecological pleiotropy, indirect effects, and system dynamics may be important factors influencing the potential for evolutionary rescue for both imperiled prey and invading predators. These results suggest that bolstering trait variation may be key to fostering evolutionary rescue, but also that the myriad direct and indirect effects of trait change could either make rescue outcomes unpredictable or, if they occur, cause rescue to have side effects such as bolstering the populations of invasive species

Contrasting changes in the abundance and diversity of North American bird assemblages from 1971 to 2010

This article is based upon work from COST Action ES1101 "Harmonising Global Biodiversity Modelling" (Harmbio), supported by COST (European Cooperation in Science and Technology).Although it is generally recognized that global biodiversity is declining, few studies have examined long-term changes in multiple biodiversity dimensions simultaneously. In this study we quantified and compared temporal changes in the abundance, taxonomic diversity, functional diversity and phylogenetic diversity of bird assemblages, using roadside monitoring data of the North American Breeding Bird Survey from 1971 to 2010. We calculated 12 abundance and diversity metrics based on five year average abundances of 519 species for each of 768 monitoring routes. We did this for all bird species together as well as for four sub-groups based on breeding habitat affinity (grassland, woodland, wetland and shrubland breeders). The majority of the biodiversity metrics increased or remained constant over the study period, whereas the overall abundance of birds showed a pronounced decrease, primarily driven by declines of the most abundant species. These results highlight how stable or even increasing metrics of taxonomic, functional or phylogenetic diversity may occur in parallel with substantial losses of individuals. We further found that patterns of change differed among the species sub-groups, with both abundance and diversity increasing for woodland birds and decreasing for grassland breeders. The contrasting changes between abundance and diversity and among the breeding habitat groups underscore the relevance of a multi-faceted approach to measuring biodiversity change. Our findings further stress the importance of monitoring the overall abundance of individuals in addition to metrics of taxonomic, functional or phylogenetic diversity, thus confirming the importance of population abundance as an essential biodiversity variable.Publisher PDFPeer reviewe

Nosology, epidemiology and pathogenesis of bipolar disorder: Recent approaches

Bipolar disorder is a highly prevalent, chronic and deteriorating mental illness that requires medical, psychological and social care for life. Realizing that bipolar disorder is more common than initially thought, the associated disability and the heterogeneity in their clinical presentation, has strengthened the research on this topic. Recent advances in the field of nosology, epidemiology and pathogenesis have begun to unravel some of the complexity of this disorder and have had a marked influence on the changes in the way they are beginning to diagnose a broad spectrum of bipolar disorders according to the latest version of the Diagnostic and Statistical Manual of Mental Disorders (DSM 5)