Characterization of complex networks: A survey of measurements

Each complex network (or class of networks) presents specific topological features which characterize its connectivity and highly influence the dynamics of processes executed on the network. The analysis, discrimination, and synthesis of complex networks therefore rely on the use of measurements capable of expressing the most relevant topological features. This article presents a survey of such measurements. It includes general considerations about complex network characterization, a brief review of the principal models, and the presentation of the main existing measurements. Important related issues covered in this work comprise the representation of the evolution of complex networks in terms of trajectories in several measurement spaces, the analysis of the correlations between some of the most traditional measurements, perturbation analysis, as well as the use of multivariate statistics for feature selection and network classification. Depending on the network and the analysis task one has in mind, a specific set of features may be chosen. It is hoped that the present survey will help the proper application and interpretation of measurements.Comment: A working manuscript with 78 pages, 32 figures. Suggestions of measurements for inclusion are welcomed by the author

Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing

We developed analytical models of DNA replication that include probabilistic initiation of origins, fork progression, passive replication, and asynchrony.We fit the model to budding yeast genome-wide microarray data probing the replication fraction and found that initiation times correlate with the precision of timing.We extracted intrinsic origin properties, such as potential origin efficiency and firing-time distribution, which cannot be done using phenomenological approaches.We propose that origin timing is controlled by stochastically activated initiators bound to origin sites rather than explicit time-measuring mechanisms

Individual-environment interactions in swimming: The smallest unit for analysing the emergence of coordination dynamics in performance?

Displacement in competitive swimming is highly dependent on fluid characteristics, since athletes use these properties to propel themselves. It is essential for sport scientists and practitioners to clearly identify the interactions that emerge between each individual swimmer and properties of an aquatic environment. Traditionally, the two protagonists in these interactions have been studied separately. Determining the impact of each swimmer’s movements on fluid flow, and vice versa, is a major challenge. Classic biomechanical research approaches have focused on swimmers’ actions, decomposing stroke characteristics for analysis, without exploring perturbations to fluid flows. Conversely, fluid mechanics research has sought to record fluid behaviours, isolated from the constraints of competitive swimming environments (e.g. analyses in two-dimensions, fluid flows passively studied on mannequins or robot effectors). With improvements in technology, however, recent investigations have focused on the emergent circular couplings between swimmers’ movements and fluid dynamics. Here, we provide insights into concepts and tools that can explain these on-going dynamical interactions in competitive swimming within the theoretical framework of ecological dynamics

The Portfolio as an Evaluation Tool: an Analysis of its Use in an Undergraduate Nursing Program

This qualitative study was carried out between April and August 2007. It analyzed the use of portfolios in the academic community. A total of nine full-time professors and 119 students enrolled in their third semester were interviewed through a semi-structured interview. Content analysis was used to analyze data. Learning evaluations are seen as a verification of knowledge and efficacy of pedagogical method, and also as an incentive to study. Evaluations are procedural, that is, evaluation is continuous, or one-time, e.g. semester end tests. The portfolio is defined as a gradual and continuous evaluation tool. The faculty members and students need to accept the use of portfolios and evaluate the possibilities of this resource. This study is a first attempt to appraise the evaluation process of an undergraduate program, and the use of portfolios and other strategies needs to be consolidated in order to improve the educational process in undergraduate nursing programs.Se trata de un estudio cualitativo, realizado en el período de abril a agosto de 2007. El objetivo fue analizar la utilización del portafolio por la comunidad académica. Se entrevistó a través de un guión a nueve docentes efectivos y 119 discentes matriculados a partir del tercer período. En el análisis de datos se utilizó el análisis de contenido. La evaluación del aprendizaje es considerada como verificación del conocimiento, como eficacia del método pedagógico e incentivo al estudio. Con relación al tipo de evaluación son procesuales y puntuales. El portafolio es definido como un instrumento de evaluación gradual y continuo. Es necesario que el cuerpo docente y discente acepte experimentar la utilización del portafolio y así evaluar las posibilidades de este recurso. Representa una primera aproximación al proceso de evaluación en la graduación y de esa forma el portafolio y otras estrategias necesitan ser consolidadas de forma a mejorar el proceso de formación en la graduación de enfermería.Este é um estudo qualitativo, realizado no período de abril a agosto de 2007. O objetivo foi analisar a utilização do portfólio pela comunidade acadêmica. Entrevistaram-se, através de um roteiro, nove docentes efetivos e 119 discentes matriculados a partir do terceiro período. Na análise de dados utilizou-se da análise de conteúdo. A avaliação da aprendizagem é considerada como verificação do conhecimento, como eficácia do método pedagógico e incentivo ao estudo. Com relação aos tipos de avaliação são eles processuais e pontuais. O portfólio é definido como instrumento de avaliação gradual e contínuo. É necessário que o corpo docente e discente aceite experimentar a utilização do portfólio e assim avaliar as possibilidades desse recurso. Representa a primeira aproximação ao processo de avaliação na graduação e, dessa forma, o portfólio e outras estratégias precisam ser consolidadas de forma a melhorar o processo de formação na graduação de enfermagem