Relatively Coherent Sets as a Hierarchical Partition Method

Finite time coherent sets [8] have recently been defined by a measure based objective function describing the degree that sets hold together, along with a Frobenius-Perron transfer operator method to produce optimally coherent sets. Here we present an extension to generalize the concept to hierarchially defined relatively coherent sets based on adjusting the finite time coherent sets to use relative mesure restricted to sets which are developed iteratively and hierarchically in a tree of partitions. Several examples help clarify the meaning and expectation of the techniques, as they are the nonautonomous double gyre, the standard map, an idealized stratospheric flow, and empirical data from the Mexico Gulf during the 2010 oil spill. Also for sake of analysis of computational complexity, we include an appendic concerning the computational complexity of developing the Ulam-Galerkin matrix extimates of the Frobenius-Perron operator centrally used here

Intermittent exploration on a scale-free network

We study an intermittent random walk on a random network of scale-free degree distribution. The walk is a combination of simple random walks of duration $t_w$ and random long-range jumps. While the time the walker needs to cover all the nodes increases with $t_w$, the corresponding time for the edges displays a non monotonic behavior with a minimum for some nontrivial value of $t_w$. This is a heterogeneity-induced effect that is not observed in homogeneous small-world networks. The optimal $t_w$ increases with the degree of assortativity in the network. Depending on the nature of degree correlations and the elapsed time the walker finds an over/under-estimate of the degree distribution exponent.Comment: 12 pages, 3 figures, 1 table, published versio

Estimating good discrete partitions from observed data: symbolic false nearest neighbors

A symbolic analysis of observed time series data requires making a discrete partition of a continuous state space containing observations of the dynamics. A particular kind of partition, called ``generating'', preserves all dynamical information of a deterministic map in the symbolic representation, but such partitions are not obvious beyond one dimension, and existing methods to find them require significant knowledge of the dynamical evolution operator or the spectrum of unstable periodic orbits. We introduce a statistic and algorithm to refine empirical partitions for symbolic state reconstruction. This method optimizes an essential property of a generating partition: avoiding topological degeneracies. It requires only the observed time series and is sensible even in the presence of noise when no truly generating partition is possible. Because of its resemblance to a geometrical statistic frequently used for reconstructing valid time-delay embeddings, we call the algorithm ``symbolic false nearest neighbors''

Portraits of Complex Networks

We propose a method for characterizing large complex networks by introducing a new matrix structure, unique for a given network, which encodes structural information; provides useful visualization, even for very large networks; and allows for rigorous statistical comparison between networks. Dynamic processes such as percolation can be visualized using animations. Applications to graph theory are discussed, as are generalizations to weighted networks, real-world network similarity testing, and applicability to the graph isomorphism problem.Comment: 6 pages, 9 figure

Transport in networks with multiple sources and sinks

We investigate the electrical current and flow (number of parallel paths) between two sets of n sources and n sinks in complex networks. We derive analytical formulas for the average current and flow as a function of n. We show that for small n, increasing n improves the total transport in the network, while for large n bottlenecks begin to form. For the case of flow, this leads to an optimal n* above which the transport is less efficient. For current, the typical decrease in the length of the connecting paths for large n compensates for the effect of the bottlenecks. We also derive an expression for the average flow as a function of n under the common limitation that transport takes place between specific pairs of sources and sinks

Random walks on the Apollonian network with a single trap

Explicit determination of the mean first-passage time (MFPT) for trapping problem on complex media is a theoretical challenge. In this paper, we study random walks on the Apollonian network with a trap fixed at a given hub node (i.e. node with the highest degree), which are simultaneously scale-free and small-world. We obtain the precise analytic expression for the MFPT that is confirmed by direct numerical calculations. In the large system size limit, the MFPT approximately grows as a power-law function of the number of nodes, with the exponent much less than 1, which is significantly different from the scaling for some regular networks or fractals, such as regular lattices, Sierpinski fractals, T-graph, and complete graphs. The Apollonian network is the most efficient configuration for transport by diffusion among all previously studied structure.Comment: Definitive version accepted for publication in EPL (Europhysics Letters

Learning about knowledge: A complex network approach

This article describes an approach to modeling knowledge acquisition in terms of walks along complex networks. Each subset of knowledge is represented as a node, and relations between such knowledge are expressed as edges. Two types of edges are considered, corresponding to free and conditional transitions. The latter case implies that a node can only be reached after visiting previously a set of nodes (the required conditions). The process of knowledge acquisition can then be simulated by considering the number of nodes visited as a single agent moves along the network, starting from its lowest layer. It is shown that hierarchical networks, i.e. networks composed of successive interconnected layers, arise naturally as a consequence of compositions of the prerequisite relationships between the nodes. In order to avoid deadlocks, i.e. unreachable nodes, the subnetwork in each layer is assumed to be a connected component. Several configurations of such hierarchical knowledge networks are simulated and the performance of the moving agent quantified in terms of the percentage of visited nodes after each movement. The Barab\'asi-Albert and random models are considered for the layer and interconnecting subnetworks. Although all subnetworks in each realization have the same number of nodes, several interconnectivities, defined by the average node degree of the interconnection networks, have been considered. Two visiting strategies are investigated: random choice among the existing edges and preferential choice to so far untracked edges. A series of interesting results are obtained, including the identification of a series of plateaux of knowledge stagnation in the case of the preferential movements strategy in presence of conditional edges.Comment: 18 pages, 19 figure

Optimal network topologies: Expanders, Cages, Ramanujan graphs, Entangled networks and all that

We report on some recent developments in the search for optimal network topologies. First we review some basic concepts on spectral graph theory, including adjacency and Laplacian matrices, and paying special attention to the topological implications of having large spectral gaps. We also introduce related concepts as ``expanders'', Ramanujan, and Cage graphs. Afterwards, we discuss two different dynamical feautures of networks: synchronizability and flow of random walkers and so that they are optimized if the corresponding Laplacian matrix have a large spectral gap. From this, we show, by developing a numerical optimization algorithm that maximum synchronizability and fast random walk spreading are obtained for a particular type of extremely homogeneous regular networks, with long loops and poor modular structure, that we call entangled networks. These turn out to be related to Ramanujan and Cage graphs. We argue also that these graphs are very good finite-size approximations to Bethe lattices, and provide almost or almost optimal solutions to many other problems as, for instance, searchability in the presence of congestion or performance of neural networks. Finally, we study how these results are modified when studying dynamical processes controlled by a normalized (weighted and directed) dynamics; much more heterogeneous graphs are optimal in this case. Finally, a critical discussion of the limitations and possible extensions of this work is presented.Comment: 17 pages. 11 figures. Small corrections and a new reference. Accepted for pub. in JSTA

Statistics of Cycles: How Loopy is your Network?

We study the distribution of cycles of length h in large networks (of size N>>1) and find it to be an excellent ergodic estimator, even in the extreme inhomogeneous case of scale-free networks. The distribution is sharply peaked around a characteristic cycle length, h* ~ N^a. Our results suggest that h* and the exponent a might usefully characterize broad families of networks. In addition to an exact counting of cycles in hierarchical nets, we present a Monte-Carlo sampling algorithm for approximately locating h* and reliably determining a. Our empirical results indicate that for small random scale-free nets of degree exponent g, a=1/(g-1), and a grows as the nets become larger.Comment: Further work presented and conclusions revised, following referee report