A revised model of fluid transport optimization in Physarum polycephalum

Optimization of fluid transport in the slime mold Physarum polycephalum has been the subject of several modeling efforts in recent literature. Existing models assume that the tube adaptation mechanism in P. polycephalum's tubular network is controlled by the sheer amount of fluid flow through the tubes. We put forward the hypothesis that the controlling variable may instead be the flow's pressure gradient along the tube. We carry out the stability analysis of such a revised mathematical model for a parallel-edge network, proving that the revised model supports the global flow-optimizing behavior of the slime mold for a substantially wider class of response functions compared to previous models. Simulations also suggest that the same conclusion may be valid for arbitrary network topologies.Comment: To appear in Journal of Mathematical Biolog

Pooling or sampling: Collective dynamics for electrical flow estimation

The computation of electrical flows is a crucial primitive for many recently proposed optimization algorithms on weighted networks. While typically implemented as a centralized subroutine, the ability to perform this task in a fully decentralized way is implicit in a number of biological systems. Thus, a natural question is whether this task can provably be accomplished in an efficient way by a network of agents executing a simple protocol. We provide a positive answer, proposing two distributed approaches to electrical flow computation on a weighted network: a deterministic process mimicking Jacobi's iterative method for solving linear systems, and a randomized token diffusion process, based on revisiting a classical random walk process on a graph with an absorbing node. We show that both processes converge to a solution of Kirchhoff's node potential equations, derive bounds on their convergence rates in terms of the weights of the network, and analyze their time and message complexity

Algorithms for Hierarchical and Semi-Partitioned Parallel Scheduling

We propose a model for scheduling jobs in a parallel machine setting that takes into account the cost of migrations by assuming that the processing time of a job may depend on the specific set of machines among which the job is migrated. For the makespan minimization objective, the model generalizes classical scheduling problems such as unrelated parallel machine scheduling, as well as novel ones such as semi-partitioned and clustered scheduling. In the case of a hierarchical family of machines, we derive a compact integer linear programming formulation of the problem and leverage its fractional relaxation to obtain a polynomial-time 2-approximation algorithm. Extensions that incorporate memory capacity constraints are also discussed

Two Results on Slime Mold Computations

We present two results on slime mold computations. In wet-lab experiments (Nature'00) by Nakagaki et al. the slime mold Physarum polycephalum demonstrated its ability to solve shortest path problems. Biologists proposed a mathematical model, a system of differential equations, for the slime's adaption process (J. Theoretical Biology'07). It was shown that the process convergences to the shortest path (J. Theoretical Biology'12) for all graphs. We show that the dynamics actually converges for a much wider class of problems, namely undirected linear programs with a non-negative cost vector. Combinatorial optimization researchers took the dynamics describing slime behavior as an inspiration for an optimization method and showed that its discretization can $\varepsilon$-approximately solve linear programs with positive cost vector (ITCS'16). Their analysis requires a feasible starting point, a step size depending linearly on $\varepsilon$, and a number of steps with quartic dependence on $\mathrm{opt}/(\varepsilon\Phi)$, where $\Phi$ is the difference between the smallest cost of a non-optimal basic feasible solution and the optimal cost ($\mathrm{opt}$). We give a refined analysis showing that the dynamics initialized with any strongly dominating point converges to the set of optimal solutions. Moreover, we strengthen the convergence rate bounds and prove that the step size is independent of $\varepsilon$, and the number of steps depends logarithmically on $1/\varepsilon$ and quadratically on $\mathrm{opt}/\Phi$

[Biblia Valenciana]

Hispanic Society of America, fuente documento original, con permiso de difusión para estudio e investigación con fines culturale

Feasibility Tests for Recurrent Real-Time Tasks in the Sporadic DAG Model

A model has been proposed in [Baruah et al., in Proceedings of the IEEE Real-Time Systems Symposium 2012] for representing recurrent precedence-constrained tasks to be executed on multiprocessor platforms, where each recurrent task is modeled by a directed acyclic graph (DAG), a period, and a relative deadline. Each vertex of the DAG represents a sequential job, while the edges of the DAG represent precedence constraints between these jobs. All the jobs of the DAG are released simultaneously and have to be completed within some specified relative deadline. The task may release jobs in this manner an unbounded number of times, with successive releases occurring at least the specified period apart. The feasibility problem is to determine whether such a recurrent task can be scheduled to always meet all deadlines on a specified number of dedicated processors. The case of a single task has been considered in [Baruah et al., 2012]. The main contribution of this paper is to consider the case of multiple tasks. We show that EDF has a speedup bound of 2-1/m, where m is the number of processors. Moreover, we present polynomial and pseudopolynomial schedulability tests, of differing effectiveness, for determining whether a set of sporadic DAG tasks can be scheduled by EDF to meet all deadlines on a specified number of processors

[Biblia Valenciana]

Hispanic Society of America, fuente documento original, con permiso de difusión para estudio e investigación con fines culturale

ILP-based approaches to partitioning recurrent workloads upon heterogeneous multiprocessors

The problem of partitioning systems of independent constrained-deadline sporadic tasks upon heterogeneous multiprocessor platforms is considered. Several different integer linear program (ILP) formulations of this problem, offering different tradeoffs between effectiveness (as quantified by speedup bound) and running time efficiency, are presented

Nucleation, solvation and boiling of helium excimer clusters

Helium excimers generated by a corona discharge were investigated in the gas and normal liquid phases of helium as a function of temperature and pressure between 3.8 and 5.0 K and 0.2 and 5.6 bar. Intense fluorescence in the visible region showed the rotationally resolved $d^3\Sigma_u^+ \rightarrow b^3\Pi_g$ transition of He$_2^*$. With increasing pressure, the rotational lines merged into single features. The observed pressure dependence of linewidths, shapes and lineshifts established phases of coexistence and separation of excimer-helium mixtures, providing detailed insight into nucleation, solvation and boiling of He$_2^*$-He$_n$ clusters.Comment: 5 pages, 5 figure

Minimizing Flow Time in the Wireless Gathering Problem

We address the problem of efficient data gathering in a wireless network through multi-hop communication. We focus on the objective of minimizing the maximum flow time of a data packet. We prove that no polynomial time algorithm for this problem can have approximation ratio less than \Omega(m^{1/3) when $m$ packets have to be transmitted, unless $P = NP$. We then use resource augmentation to assess the performance of a FIFO-like strategy. We prove that this strategy is 5-speed optimal, i.e., its cost remains within the optimal cost if we allow the algorithm to transmit data at a speed 5 times higher than that of the optimal solution we compare to