Transfer matrix solution of the Wako-Sait\^o-Mu\~noz-Eaton model augmented by arbitrary short range interactions

The Wako-Sait{\^o}-Mu\~noz-Eaton (WSME) model, initially introduced in the theory of protein folding, has also been used in modeling the RNA folding and some epitaxial phenomena. The advantage of this model is that it admits exact solution in the general inhomogeneous case (Bruscolini and Pelizzola, 2002) which facilitates the study of realistic systems. However, a shortcoming of the model is that it accounts only for interactions within continuous stretches of native bonds or atomic chains while neglecting interstretch (interchain) interactions. But due to the biopolymer (atomic chain) flexibility, the monomers (atoms) separated by several non-native bonds along the sequence can become closely spaced. This produces their strong interaction. The inclusion of non-WSME interactions into the model makes the model more realistic and improves its performance. In this study we add arbitrary interactions of finite range and solve the new model by means of the transfer matrix technique. We can therefore exactly account for the interactions which in proteomics are classified as medium- and moderately long-range ones.Comment: 15 pages, 2 figure

Identifying the young low-mass stars within 25 pc. II. Distances, kinematics and group membership

We have conducted a kinematic study of 165 young M dwarfs with ages of <300 Myr. Our sample is composed of stars and brown dwarfs with spectral types ranging from K7 to L0, detected by ROSAT and with photometric distances of <25 pc assuming the stars are single and on the main-sequence. In order to find stars kinematically linked to known young moving groups (YMGs), we measured radial velocities for the complete sample with Keck and CFHT optical spectroscopy and trigonometric parallaxes for 75 of the M dwarfs with the CAPSCam instrument on the du Pont 2.5-m Telescope. Due to their youthful overluminosity and unresolved binarity, the original photometric distances for our sample underestimated the distances by 70% on average, excluding two extremely young (<3 Myr) objects found to have distances beyond a few hundred parsecs. We searched for kinematic matches to 14 reported YMGs and identified 9 new members of the AB Dor YMG and 2 of the Ursa Majoris group. Additional possible candidates include 6 Castor, 4 Ursa Majoris, 2 AB Dor members, and 1 member each of the Her-Lyr and beta Pic groups. Our sample also contains 27 young low-mass stars and 4 brown dwarfs with ages <150 Myr which are not associated with any known YMG. We identified an additional 15 stars which are kinematic matches to one of the YMGs, but the ages from spectroscopic diagnostics and/or the positions on the sky do not match. These warn against grouping stars together based only on kinematics and that a confluence of evidence is required to claim that a group of stars originated from the same star-forming event.Comment: Accepted for publication in the Astrophysical Journa

ALMA Observations of the Young Substellar Binary System 2M1207

We present ALMA observations of the 2M1207 system, a young binary made of a brown dwarf with a planetary-mass companion at a projected separation of about 40 au. We detect emission from dust continuum at 0.89 mm and from the $J = 3 - 2$ rotational transition of CO from a very compact disk around the young brown dwarf. The small radius found for this brown dwarf disk may be due to truncation from the tidal interaction with the planetary-mass companion. Under the assumption of optically thin dust emission, we estimated a dust mass of 0.1 $M_{\oplus}$ for the 2M1207A disk, and a 3$\sigma$ upper limit of $\sim 1~M_{\rm{Moon}}$ for dust surrounding 2M1207b, which is the tightest upper limit obtained so far for the mass of dust particles surrounding a young planetary-mass companion. We discuss the impact of this and other non-detections of young planetary-mass companions for models of planet formation, which predict the presence of circum-planetary material surrounding these objects.Comment: 10 pages, 6 figures, accepted for publication in A

Research on the Geography of Agricultural Change: Redundant or Revitalized?

Future research directions for agricultural geography were the subject of debate in Area in the late 1980s. The subsequent application of political economy ideas undoubtedly revived interest in agricultural research. This paper argues that agricultural geography contains greater diversity than the dominant political economy discourse would suggest. It reviews ‘other’ areas of agricultural research on policy, post-productivism, people, culture and animals, presenting future suggestions for research. They should ensure that agricultural research continues revitalized rather than redundant into the next millennium

Relative space-time asymmetries in pion and nucleon production in non-central nucleus-nucleus collisions at high energies

We propose to use the ratio of the pion-proton correlation functions evaluated under different conditions to study the relative space-time asymmetries in pion and proton emission (pion and nucleon source relative shifts) in high energy heavy ion collision. We address the question of the non-central collisions, where the sources can be shifted spatially both in the longitudinal and in the transverse directions in the reaction plane. We use the RQMD event generator to illustrate the effect and the technique.Comment: RevTex, 4 pages, 3 figures included as eps file

Determination of the basic timescale in kinetic Monte Carlo simulations by comparison with cyclic-voltammetry experiments

While kinetic Monte Carlo simulations can provide long-time simulations of the dynamics of physical and chemical systems, it is not yet possible in general to identify the inverse Monte Carlo attempt frequency with a physical timescale. Here we demonstrate such an identification by comparing simulations with experimental data. Using a dynamic lattice-gas model for the electrosorption of Br on Ag(100), we measure the scan-rate dependence of the separation between positive-and negative-going peaks in cyclic-voltammetry (CV) and compare simulated and experimental peak separations. By adjusting the Monte Carlo attempt frequency, good agreement between simulated and experimental peak separations is achieved. It is also found that the uniqueness of such a determination is dependent on the relative values of the adsorption/desorption and diffusion free-energy barriers.Comment: Accepted for publication in Surface Science Letters,8 pages, 4 figure

Heavy Baryon Production and Decay

The branching ratio B(Lambda_c -> p K- pi+) normalizes the production and decay of charmed and bottom baryons. At present, this crucial branching ratio is extracted dominantly from B.bar -> baryons analyses. This note questions several of the underlying assumptions and predicts sizable B.bar -> D(*) N N'.bar X transitions, which were traditionally neglected. It predicts B(Lambda_c -> p K- pi+) to be significantly larger (0.07 +/- 0.02) than the world average. Some consequences are briefly mentioned. Several techniques to measure B(Lambda_c -> p K- pi+) are outlined with existing or soon available data samples. By equating two recent CLEO results, an appendix obtains B(D0 -> K- pi+)= 0.035 +/- 0.002, which is somewhat smaller than the current world average.Comment: 27 pages, 4 eps figures, revte

Nucleon decay matrix elements with the Wilson quark action: an update

We present preliminary results of a new lattice computation of hadronic matrix elements of baryon number violating operators which appear in the low-energy effective Lagrangian of (SUSY-)Grand Unified Theories. The contribution of irrelevant form factor which has caused an underestimate of the matrix elements in previous studies is subtracted in this calculation. Our results are 2$\sim$4 times larger than the most conservative values often employed in phenomenological analyses of nucleon decay with specific GUT models.Comment: LATTICE99(matrixelements), 3 pages, 2 figure

SU(3) Mixing for Excited Mesons

The SU(3)-flavor symmetry breaking and the quark-antiquark annihilation mechanism are taken into account for describing the singlet-octet mixing for several nonets assigned by Particle Data Group(PDG). This task is approached with the mass matrix formalism