Development and application of a sensitive, high precision weighing lysimeter for use in greenhouses

A high precision weighing lysimeter for measuring evapotranspiration in greenhouses was developed. The instrument has a measurement of sensitivity of one part in 106, that is one order of magnitude better than any other so far described in the literature. With it, evaporation rates in a greenhouse, even at night, can be measured on a one minute time scale. Development and construction of the instrument are described and measurements of the transpiration of a tomato crop in a greenhouse are used to demonstrate its capabilities

Correcting the polarization effect in low frequency Dielectric Spectroscopy

We demonstrate a simple and robust methodology for measuring and analyzing the polarization impedance appearing at interface between electrodes and ionic solutions, in the frequency range from 1 to $10^6$ Hz. The method assumes no particular behavior of the electrode polarization impedance and it only makes use of the fact that the polarization effect dies out with frequency. The method allows a direct and un-biased measurement of the polarization impedance, whose behavior with the applied voltages and ionic concentration is methodically investigated. Furthermore, based on the previous findings, we propose a protocol for correcting the polarization effect in low frequency Dielectric Spectroscopy measurements of colloids. This could potentially lead to the quantitative resolution of the $\alpha$-dispersion regime of live cells in suspension

Modeling and predicting the shape of the far-infrared to submillimeter emission in ultra-compact HII regions and cold clumps

Dust properties are very likely affected by the environment in which dust grains evolve. For instance, some analyses of cold clumps (7 K- 17 K) indicate that the aggregation process is favored in dense environments. However, studying warm (30 K-40 K) dust emission at long wavelength ($\lambda$$>$300 $\mu$m) has been limited because it is difficult to combine far infared-to-millimeter (FIR-to-mm) spectral coverage and high angular resolution for observations of warm dust grains. Using Herschel data from 70 to 500 $\mu$m, which are part of the Herschel infrared Galactic (Hi-GAL) survey combined with 1.1 mm data from the Bolocam Galactic Plane Survey (BGPS), we compared emission in two types of environments: ultra-compact HII (UCHII) regions, and cold molecular clumps (denoted as cold clumps). With this comparison we tested dust emission models in the FIR-to-mm domain that reproduce emission in the diffuse medium, in these two environments (UCHII regions and cold clumps). We also investigated their ability to predict the dust emission in our Galaxy. We determined the emission spectra in twelve UCHII regions and twelve cold clumps, and derived the dust temperature (T) using the recent two-level system (TLS) model with three sets of parameters and the so-called T-$\beta$ (temperature-dust emissvity index) phenomenological models, with $\beta$ set to 1.5, 2 and 2.5. We tested the applicability of the TLS model in warm regions for the first time. This analysis indicates distinct trends in the dust emission between cold and warm environments that are visible through changes in the dust emissivity index. However, with the use of standard parameters, the TLS model is able to reproduce the spectral behavior observed in cold and warm regions, from the change of the dust temperature alone, whereas a T-$\beta$ model requires $\beta$ to be known.Comment: Accepted for publication in A&A. 19 pages, 8 figures, 7 table

The Structure of a Low-Metallicity Giant Molecular Cloud Complex

To understand the impact of low metallicities on giant molecular cloud (GMC) structure, we compare far infrared dust emission, CO emission, and dynamics in the star-forming complex N83 in the Wing of the Small Magellanic Cloud. Dust emission (measured by Spitzer as part of the S3MC and SAGE-SMC surveys) probes the total gas column independent of molecular line emission and traces shielding from photodissociating radiation. We calibrate a method to estimate the dust column using only the high-resolution Spitzer data and verify that dust traces the ISM in the HI-dominated region around N83. This allows us to resolve the relative structures of H2, dust, and CO within a giant molecular cloud complex, one of the first times such a measurement has been made in a low-metallicity galaxy. Our results support the hypothesis that CO is photodissociated while H2 self-shields in the outer parts of low-metallicity GMCs, so that dust/self shielding is the primary factor determining the distribution of CO emission. Four pieces of evidence support this view. First, the CO-to-H2 conversion factor averaged over the whole cloud is very high 4-11 \times 10^21 cm^-2/(K km/s), or 20-55 times the Galactic value. Second, the CO-to-H2 conversion factor varies across the complex, with its lowest (most nearly Galactic) values near the CO peaks. Third, bright CO emission is largely confined to regions of relatively high line-of-sight extinction, A_V >~ 2 mag, in agreement with PDR models and Galactic observations. Fourth, a simple model in which CO emerges from a smaller sphere nested inside a larger cloud can roughly relate the H2 masses measured from CO kinematics and dust.Comment: 17 pages, 10 figures (including appendix), accepted for publication in the Astrophysical Journa

Evaluating 5-nitrofurans as trypanocidal agents

The nitroheterocycle nifurtimox, as part of a nifurtimox-eflornithine combination therapy, represents one of a limited number of treatments targeting Trypanosoma brucei, the causative agent of human African trypanosomiasis. The mode of action of this prodrug involves an initial activation reaction catalysed by a type I nitroreductase (NTR), an enzyme found predominantly in prokaryotes, leading to the formation of a cytotoxic unsaturated open chain nitrile metabolite. Here, we evaluate the trypanocidal activity of a library of other 5-nitrofurans against bloodstream form T. brucei as a preliminary step in the identification of additional nitroaromatic compounds that could potentially partner eflornithine. Biochemical screening against purified enzyme revealed that all 5-nitrofurans were effective substrates for TbNTR with the preferred compounds having apparent kcat/KM values approximately 50-fold greater than nifurtimox. For several compounds, in vitro reduction by this nitroreductase yielded products characterized by mass spectroscopy as either unsaturated or saturated open chain nitriles. When tested against bloodstream form T. brucei, many of the derivatives displayed significant growth inhibitory properties with the most potent compounds generating IC50 values around 200 nM. The anti-parasitic activity of the most potent agents was demonstrated to be NTR dependent as parasites having reduced levels of the enzyme displayed resistance to the compounds while parasites over expressing TbNTR showed hypersensitivity. We conclude that other members of the 5-nitrofurans class of nitroheterocycles have potential to treat human African trypanosomiasis perhaps as an alternative partner prodrug to nifurtimox in the next generation of eflornithine-based combinational therapies

Submillimeter to centimeter excess emission from the Magellanic Clouds. II. On the nature of the excess

Dust emission at submm to cm wavelengths is often simply the Rayleigh-Jeans tail of dust particles at thermal equilibrium and is used as a cold mass tracer in various environments including nearby galaxies. However, well-sampled spectral energy distributions of the nearby, star-forming Magellanic Clouds have a pronounced (sub-)millimeter excess (Israel et al., 2010). This study attempts to confirm the existence of such a millimeter excess above expected dust, free-free and synchrotron emission and to explore different possibilities for its origin. We model NIR to radio spectral energy distributions of the Magellanic Clouds with dust, free-free and synchrotron emission. A millimeter excess emission is confirmed above these components and its spectral shape and intensity are analysed in light of different scenarios: very cold dust, Cosmic Microwave Background (CMB) fluctuations, a change of the dust spectral index and spinning dust emission. We show that very cold dust or CMB fluctuations are very unlikely explanations for the observed excess in these two galaxies. The excess in the LMC can be satisfactorily explained either by a change of the spectral index due to intrinsic properties of amorphous grains, or by spinning dust emission. In the SMC however, due to the importance of the excess, the dust grain model including TLS/DCD effects cannot reproduce the observed emission in a simple way. A possible solution was achieved with spinning dust emission, but many assumptions on the physical state of the interstellar medium had to be made. Further studies, using higher resolution data from Planck and Herschel, are needed to probe the origin of this observed submm-cm excess more definitely. Our study shows that the different possible origins will be best distinguished where the excess is the highest, as is the case in the SMC.Comment: 7 pages, 6 figures; accepted in A&

Dust in dwarf galaxies: The case of NGC 4214

We have carried out a detailed modelling of the dust heating and emission in the nearby, starbursting dwarf galaxy NGC 4214. Due to its proximity and the great wealth of data from the UV to the millimeter range (from GALEX, HST, {\it Spitzer}, Herschel, Planck and IRAM) it is possible to separately model the emission from HII regions and their associated photodissociation regions (PDRs) and the emission from diffuse dust. Furthermore, most model parameters can be directly determined from the data leaving very few free parameters. We can fit both the emission from HII+PDR regions and the diffuse emission in NGC 4214 with these models with "normal" dust properties and realistic parameters.Comment: 4pages, 3 figures. To appear in 'The Spectral Energy Distribution of Galaxies' Proceedings IAU Symposium No 284, 201

Hierarchical progressive surveys. Multi-resolution HEALPix data structures for astronomical images, catalogues, and 3-dimensional data cubes

Scientific exploitation of the ever increasing volumes of astronomical data requires efficient and practical methods for data access, visualisation, and analysis. Hierarchical sky tessellation techniques enable a multi-resolution approach to organising data on angular scales from the full sky down to the individual image pixels. Aims. We aim to show that the Hierarchical progressive survey (HiPS) scheme for describing astronomical images, source catalogues, and three-dimensional data cubes is a practical solution to managing large volumes of heterogeneous data and that it enables a new level of scientific interoperability across large collections of data of these different data types. Methods. HiPS uses the HEALPix tessellation of the sphere to define a hierarchical tile and pixel structure to describe and organise astronomical data. HiPS is designed to conserve the scientific properties of the data alongside both visualisation considerations and emphasis on the ease of implementation. We describe the development of HiPS to manage a large number of diverse image surveys, as well as the extension of hierarchical image systems to cube and catalogue data. We demonstrate the interoperability of HiPS and Multi-Order Coverage (MOC) maps and highlight the HiPS mechanism to provide links to the original data. Results. Hierarchical progressive surveys have been generated by various data centres and groups for ~200 data collections including many wide area sky surveys, and archives of pointed observations. These can be accessed and visualised in Aladin, Aladin Lite, and other applications. HiPS provides a basis for further innovations in the use of hierarchical data structures to facilitate the description and statistical analysis of large astronomical data sets.Comment: 21 pages, 6 figures. Accepted for publication in Astronomy & Astrophysic

The dust properties and physical conditions of the interstellar medium in the LMC massive star forming complex N11

We combine Spitzer and Herschel data of the star-forming region N11 in the Large Magellanic Cloud to produce detailed maps of the dust properties in the complex and study their variations with the ISM conditions. We also compare APEX/LABOCA 870um observations with our model predictions in order to decompose the 870um emission into dust and non-dust (free-free emission and CO(3-2) line) contributions. We find that in N11, the 870um can be fully accounted for by these 3 components. The dust surface density map of N11 is combined with HI and CO observations to study local variations in the gas-to-dust mass ratios. Our analysis leads to values lower than those expected from the LMC low-metallicity as well as to a decrease of the gas-to-dust mass ratio with the dust surface density. We explore potential hypotheses that could explain the low observed gas-to-dust mass ratios (variations in the XCO factor, presence of CO-dark gas or of optically thick HI or variations in the dust abundance in the dense regions). We finally decompose the local SEDs using a Principal Component Analysis (i.e. with no a priori assumption on the dust composition in the complex). Our results lead to a promising decomposition of the local SEDs in various dust components (hot, warm, cold) coherent with that expected for the region. Further analysis on a larger sample of galaxies will follow in order to understand how unique this decomposition is or how it evolves from one environment to another.Comment: 24 pages, 16 figures, accepted for publication in MNRA

Millimeter dust continuum emission unveiling the true mass of giant molecular clouds in the Small Magellanic Cloud

CO observations have been so far the best way to trace molecular gas in external galaxies, but at low metallicity the gas mass deduced could be largely underestimated. At present, the kinematic information of CO data cubes are used to estimate virial masses and trace the total mass of the molecular clouds. Millimeter dust emission can also be used as a dense gas tracer and could unveil H2 envelopes lacking CO. These different tracers must be compared in different environments. This study compares virial masses to masses deduced from millimeter emission, in two GMC samples: the local molecular clouds in our Galaxy and their equivalents in the Small Magellanic Cloud (SMC), one of the nearest low metallicity dwarf galaxy. In our Galaxy, mass estimates deduced from millimeter emission are consistent with masses deduced from gamma ray analysis and trace the total mass of the clouds. Virial masses are systematically larger (twice on average) than mass estimates from millimeter dust emission. This difference decreases toward high masses and has already been reported in previous studies. In the SMC however, molecular cloud masses deduced from SIMBA millimeter observations are systematically higher (twice on average for conservative values of the dust to gas ratio and dust emissivity) than the virial masses from SEST CO observations. The observed excess can not be accounted for by any plausible change of dust properties. Taking a general form for the virial theorem, we show that a magnetic field strength of ~15 micro Gauss in SMC clouds could provide additional support to the clouds and explain the difference observed. Masses of SMC molecular clouds have therefore been underestimated so far. Magnetic pressure may contribute significantly to their support.Comment: 10 pages, 2 figures, Astronomy & Astrophysics accepte