Helminth co-infection in Helicobacter pylori infected INS-GAS mice attenuates gastric premalignant lesions of epithelial dysplasia and glandular atrophy and preserves colonization resistance of the stomach to lower bowel microbiota

Higher prevalence of helminth infections in Helicobacter pylori infected children was suggested to potentially lower the life-time risk for gastric adenocarcinoma. In rodent models, helminth co-infection does not reduce Helicobacter-induced inflammation but delays progression of pre-malignant gastric lesions. Because gastric cancer in INS-GAS mice is promoted by intestinal microflora, the impact of Heligmosomoides polygyrus co-infection on H. pylori-associated gastric lesions and microflora were evaluated. Male INS-GAS mice co-infected with H. pylori and H. polygyrus for 5 months were assessed for gastrointestinal lesions, inflammation-related mRNA expression, FoxP3[superscript +] cells, epithelial proliferation, and gastric colonization with H. pylori and Altered Schaedler Flora. Despite similar gastric inflammation and high levels of proinflammatory mRNA, helminth co-infection increased FoxP3[superscript +] cells in the corpus and reduced H. pylori-associated gastric atrophy (p < 0.04), dysplasia (p < 0.02) and prevented H. pylori-induced changes in the gastric flora (p < 0.05). This is the first evidence of helminth infection reducing H. pylori-induced gastric lesions while inhibiting changes in gastric flora, consistent with prior observations that gastric colonization with enteric microbiota accelerated gastric lesions in INS-GAS mice. Identifying how helminths reduce gastric premalignant lesions and impact bacterial colonization of the H. pylori infected stomach could lead to new treatment strategies to inhibit progression from chronic gastritis to cancer in humans.RO1-CA67529R01DK052413PO1CA26731P01 CA028842P30ESO2109R01DK06507

Investigating style evolution of Western classical music: A computational approach

In musicology, there has been a long debate about a meaningful partitioning and description of music history regarding composition styles. Particularly, concepts of historical periods have been criticized since they cannot account for the continuous and interwoven evolution of style. To systematically study this evolution, large corpora are necessary suggesting the use of computational strategies. This article presents such strategies and experiments relying on a dataset of 2000 audio recordings, which cover more than 300 years of music history. From the recordings, we extract different tonal features. We propose a method to visualize these features over the course of history using evolution curves. With the curves, we re-trace hypotheses concerning the evolution of chord transitions, intervals, and tonal complexity. Furthermore, we perform unsupervised clustering of recordings across composition years, individual pieces, and composers. In these studies, we found independent evidence of historical periods that broadly agrees with traditional views as well as recent data-driven experiments. This shows that computational experiments can provide novel insights into the evolution of styles

Surface Strain Variation in Human Patellar Tendon and Knee Cruciate Ligaments

Local surface strains in bone-fascicle-bone subunits from human patellar tendon and anterior and posterior cruciate ligaments were measured between markers using low-speed photography during low rate subfailure testing. A simple stress-strain relationship of the power form was found to describe the bone-to-bone responses up to four percent strain for all three tissue types examined. The regional material behavior were best fit using an inverted strain-stress relationship, however. The power model, fitted to the experimental data, conformed to the expected stress-strain relationship better than either the quadratic or cubic models. With few exceptions, for a given stress, the strains near the proximal and distal bone ends were not significantly different from each other, but were significantly higher than the strains in the tissue midregions. Local strain patterns generally varied among subunits from the same tissue

Community-driven development of standard software modules for search and rescue robots

The main goal of the paper is to continuously enlarge the set of software building blocks that can be reused in the search and rescue domain

Probability of individual shoots from mesocosms being genetically assigned to one of three potential source populations, PM (sampled in 2005), CB, or BFI (both sampled in 2006), using the source populations as “learning” samples in the program STRUCTURE [42].

<p>Each genotyped individual from the mesocosms is represented by a narrow column on the x-axis. The y-axis shows the probability of belonging to each of the three source populations.</p

Conservation of Eelgrass (<i>Zostera marina</i>) Genetic Diversity in a Mesocosm-Based Restoration Experiment

<div><p>Eelgrass (<i>Zostera marina</i>) forms the foundation of an important shallow coastal community in protected estuaries and bays. Widespread population declines have stimulated restoration efforts, but these have often overlooked the importance of maintaining the evolutionary potential of restored populations by minimizing the reduction in genetic diversity that typically accompanies restoration. In an experiment simulating a small-scale restoration, we tested the effectiveness of a buoy-deployed seeding technique to maintain genetic diversity comparable to the seed source populations. Seeds from three extant source populations in San Francisco Bay were introduced into eighteen flow-through baywater mesocosms. Following seedling establishment, we used seven polymorphic microsatellite loci to compare genetic diversity indices from 128 shoots to those found in the source populations. Importantly, allelic richness and expected heterozygosity were not significantly reduced in the mesocosms, which also preserved the strong population differentiation present among source populations. However, the inbreeding coefficient <i>F</i>_IS was elevated in two of the three sets of mesocosms when they were grouped according to their source population. This is probably a Wahlund effect from confining all half-siblings within each spathe to a single mesocosm, elevating <i>F</i>_IS when the mesocosms were considered together. The conservation of most alleles and preservation of expected heterozygosity suggests that this seeding technique is an improvement over whole-shoot transplantation in the conservation of genetic diversity in eelgrass restoration efforts.</p></div

Cytotoxic Escherichia coli strains encoding colibactin, cytotoxic necrotizing factor, and cytolethal distending toxin colonize laboratory common marmosets (Callithrix jacchus)

© 2021, The Author(s). Cyclomodulins are virulence factors that modulate cellular differentiation, apoptosis, and proliferation. These include colibactin (pks), cytotoxic necrotizing factor (cnf), and cytolethal distending toxin (cdt). Pathogenic pks+, cnf+, and cdt+ E. coli strains are associated with inflammatory bowel disease (IBD) and colorectal cancer in humans and animals. Captive marmosets are frequently afflicted with IBD-like disease, and its association with cyclomodulins is unknown. Cyclomodulin-encoding E. coli rectal isolates were characterized using PCR-based assays in healthy and clinically affected marmosets originating from three different captive sources. 139 E. coli isolates were cultured from 122 of 143 marmosets. The pks gene was detected in 56 isolates (40%), cnf in 47 isolates (34%), and cdt in 1 isolate (0.7%). The prevalences of pks+ and cnf+ E. coli isolates were significantly different between the three marmoset colonies. 98% of cyclomodulin-positive E. coli belonged to phylogenetic group B2. Representative isolates demonstrated cyclomodulin cytotoxicity, and serotyping and whole genome sequencing were consistent with pathogenic E. coli strains. However, the presence of pks+, cnf+, or cdt+ E. coli did not correlate with clinical gastrointestinal disease in marmosets. Cyclomodulin-encoding E. coli colonize laboratory common marmosets in a manner dependent on the source, potentially impacting reproducibility in marmoset models