Spin Chain for Quantum Strings

We review and compare the integrable structures in N=4 gauge theory and string theory on AdS5xS5. Recently, Bethe ansaetze for gauge theory/weak coupling and string theory/strong coupling were proposed to describe scaling dimensions in the su(2) subsector. Here we investigate the Bethe equations for quantum string theory, naively extrapolated to weak coupling. Excitingly, we find a spin chain Hamiltonian similar, but not equal, to the gauge theory dilatation operator.Comment: 10 pages, Contribution to RTN and EXT Workshop, Kolymbari, Crete, Greece, 5-10 September 2004, v2: numerical comparision with spinning strings added, coefficient of H4 in Tab. 3 correcte

Holography Beyond the Penrose Limit

The flat pp-wave background geometry has been realized as a particular Penrose limit of AdS_5 x S^5. It describes a string that has been infinitely boosted along an equatorial null geodesic in the S^5 subspace. The string worldsheet Hamiltonian in this background is free. Finite boosts lead to curvature corrections that induce interacting perturbations of the string worldsheet Hamiltonian. We develop a systematic light-cone gauge quantization of the interacting worldsheet string theory and use it to obtain the interacting spectrum of the so-called `two-impurity' states of the string. The quantization is technically rather intricate and we provide a detailed account of the methods we use to extract explicit results. We give a systematic treatment of the fermionic states and are able to show that the spectrum possesses the proper extended supermultiplet structure (a non-trivial fact since half the supersymmetry is nonlinearly realized). We test holography by comparing the string energy spectrum with the scaling dimensions of corresponding gauge theory operators. We confirm earlier results that agreement obtains in low orders of perturbation theory, but breaks down at third order. The methods presented here can be used to explore these issues in a wider context than is specifically dealt with in this paper.Comment: v2: typo corrected in eqn. (6.2), version appearing in Nucl. Phys. B; LaTeX, 57 page

Quantifying selection in immune receptor repertoires

The efficient recognition of pathogens by the adaptive immune system relies on the diversity of receptors displayed at the surface of immune cells. T-cell receptor diversity results from an initial random DNA editing process, called VDJ recombination, followed by functional selection of cells according to the interaction of their surface receptors with self and foreign antigenic peptides. To quantify the effect of selection on the highly variable elements of the receptor, we apply a probabilistic maximum likelihood approach to the analysis of high-throughput sequence data from the $\beta$-chain of human T-cell receptors. We quantify selection factors for V and J gene choice, and for the length and amino-acid composition of the variable region. Our approach is necessary to disentangle the effects of selection from biases inherent in the recombination process. Inferred selection factors differ little between donors, or between naive and memory repertoires. The number of sequences shared between donors is well-predicted by the model, indicating a purely stochastic origin of such "public" sequences. We find a significant correlation between biases induced by VDJ recombination and our inferred selection factors, together with a reduction of diversity during selection. Both effects suggest that natural selection acting on the recombination process has anticipated the selection pressures experienced during somatic evolution

Violations of Bjorken scaling in inclusive e+e- annihilation

We discuss the application of renormalization-group techniques to inclusive e+e- annihilation. It is shown by a modest extension of Mueller's techniques that annihilation structure functions have a behavior completely analogous to electroproduction structure functions: Their moments scale for large virtual photon mass, and this scaling is described by "anomalous dimensions" which have a singularity structure and general form very similar to the usual anomalous dimension, though there is no simple relation between the two. We show how information about the structure functions can be deduced from the moments and how, in appropriate limits, deviations from Bjorken scaling can be interpreted in terms of an underlying field theory

Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

Despite the extreme diversity of T cell repertoires, many identical T-cell receptor (TCR) sequences are found in a large number of individual mice and humans. These widely-shared sequences, often referred to as `public', have been suggested to be over-represented due to their potential immune functionality or their ease of generation by V(D)J recombination. Here we show that even for large cohorts the observed degree of sharing of TCR sequences between individuals is well predicted by a model accounting for by the known quantitative statistical biases in the generation process, together with a simple model of thymic selection. Whether a sequence is shared by many individuals is predicted to depend on the number of queried individuals and the sampling depth, as well as on the sequence itself, in agreement with the data. We introduce the degree of publicness conditional on the queried cohort size and the size of the sampled repertoires. Based on these observations we propose a public/private sequence classifier, `PUBLIC' (Public Universal Binary Likelihood Inference Classifier), based on the generation probability, which performs very well even for small cohort sizes

Extended QCD(2) from dimensional projection of QCD(4)

We study an extended QCD model in (1+1) dimensions obtained from QCD in 4D by compactifying two spatial dimensions and projecting onto the zero-mode subspace. We work out this model in the large $N_c$ limit and using light cone gauge but keeping the equal-time quantization. This system is found to induce a dynamical mass for transverse gluons -- adjoint scalars in QCD(2), and to undergo a chiral symmetry breaking with the full quark propagators yielding non-tachyonic, dynamical quark masses, even in the chiral limit. We study quark-antiquark bound states which can be classified in this model by their properties under Lorentz transformations inherited from 4D. The scalar and pseudoscalar sectors of the theory are examined and in the chiral limit a massless ground state for pseudoscalars is revealed with a wave function generalizing the so called 't Hooft pion solution.Comment: JHEP class, 16 pages, 3 figures. Change in the title, some improvements in section 2, minors changes and comments added in introduction and conclusions. References added. Version appearing in JHE

Linear Sigma Models of H and KK Monopoles

We propose a gauged linear sigma model of k H-monopoles. We also consider the T-dual of this model describing KK-monopoles and clarify the meaning of "winding coordinate" studied recently in hep-th/0507204.Comment: 13 pages, lanlmac; V3:added argument on the nature of disk instanto