A score including ADAM17 substrates correlates to recurring cardiovascular event in subjects with atherosclerosis

Atherosclerosis disease is a leading cause for mortality and morbidity. The narrowing/rupture of a vulnerable atherosclerotic plaque is accountable for acute cardiovascular events. However, despite of an intensive research, a reliable clinical method which may disclose a vulnerable patient is still unavailable

An Efficient Hybrid Planning Framework for In-Station Train Dispatching

In-station train dispatching is the problem of optimising the effective utilisation of available railway infrastructures for mitigating incidents and delays. This is a fundamental problem for the whole railway network efficiency, and in turn for the transportation of goods and passengers, given that stations are among the most critical points in networks since a high number of interconnections of trains’ routes holds therein. Despite such importance, nowadays in-station train dispatching is mainly managed manually by human operators. In this paper we present a framework for solving in-station train dispatching problems, to support human operators in dealing with such task. We employ automated planning languages and tools for solving the task: PDDL+ for the specification of the problem, and the ENHSP planning engine, enhanced by domain-specific techniques, for solving the problem. We carry out a in-depth analysis using real data of a station of the North West of Italy, that shows the effectiveness of our approach and the contribution that domain-specific techniques may have in efficiently solving the various instances of the problem. Finally, we also present a visualisation tool for graphically inspecting the generated plans

Machine learning of microscopic structure-dynamics relationships in complex molecular systems

In many complex molecular systems, the macroscopic ensemble’s properties are controlled by microscopic dynamic events (or fluctuations) that are often difficult to detect via pattern-recognition approaches. Discovering the relationships between local structural environments and the dynamical events originating from them would allow unveiling microscopic-level structure-dynamics relationships fundamental to understand the macroscopic behavior of complex systems. Here we show that, by coupling advanced structural (e.g. Smooth Overlap of Atomic Positions, SOAP) with local dynamical descriptors (e.g. Local Environment and Neighbor Shuffling, LENS) in a unique dataset, it is possible to improve both individual SOAP- and LENS-based analyses, obtaining a more complete characterization of the system under study. As representative examples, we use various molecular systems with diverse internal structural dynamics. On the one hand, we demonstrate how the combination of structural and dynamical descriptors facilitates decoupling relevant dynamical fluctuations from noise, overcoming the intrinsic limits of the individual analyses. Furthermore, machine learning approaches also allow extracting from such combined structural/dynamical dataset useful microscopic-level relationships, relating key local dynamical events (e.g. LENS fluctuations) occurring in the systems to the local structural (SOAP) environments they originate from. Given its abstract nature, we believe that such an approach will be useful in revealing hidden microscopic structure-dynamics relationships fundamental to rationalize the behavior of a variety of complex systems, not necessarily limited to the atomistic and molecular scales

Detecting dynamic domains and local fluctuations in complex molecular systems via timelapse neighbors shuffling

Many complex molecular systems owe their properties to local dynamic rearrangements or fluctuations that, despite the rise of machine learning (ML) and sophisticated structural descriptors, remain often difficult to detect. Here we show an ML framework based on a new descriptor, named Local Environments and Neighbors Shuffling (LENS), which allows identifying dynamic domains and detecting local fluctuations in a variety of systems via tracking how much the surrounding of each molecular unit changes over time in terms of neighbor individuals. Statistical analysis of the LENS time-series data allows to blindly detect different dynamic domains within various types of molecular systems with, e.g., liquid-like, solid-like, or diverse dynamics, and to track local fluctuations emerging within them in an efficient way. The approach is found robust, versatile, and, given the abstract definition of the LENS descriptor, capable of shedding light on the dynamic complexity of a variety of (not necessarily molecular) systems

Machine learning of microscopic structure-dynamics relationships in complex molecular systems

In many complex molecular systems, the macroscopic ensemble's properties are controlled by microscopic dynamic events (or fluctuations) that are often difficult to detect via pattern-recognition approaches. Discovering the relationships between local structural environments and the dynamical events originating from them would allow unveiling microscopic level structure-dynamics relationships fundamental to understand the macroscopic behavior of complex systems. Here we show that, by coupling advanced structural (e.g., Smooth Overlap of Atomic Positions, SOAP) with local dynamical descriptors (e.g., Local Environment and Neighbor Shuffling, LENS) in a unique dataset, it is possible to improve both individual SOAP- and LENS-based analyses, obtaining a more complete characterization of the system under study. As representative examples, we use various molecular systems with diverse internal structural dynamics. On the one hand, we demonstrate how the combination of structural and dynamical descriptors facilitates decoupling relevant dynamical fluctuations from noise, overcoming the intrinsic limits of the individual analyses. Furthermore, machine learning approaches also allow extracting from such combined structural/dynamical dataset useful microscopic-level relationships, relating key local dynamical events (e.g., LENS fluctuations) occurring in the systems to the local structural (SOAP) environments they originate from. Given its abstract nature, we believe that such an approach will be useful in revealing hidden microscopic structure-dynamics relationships fundamental to rationalize the behavior of a variety of complex systems, not necessarily limited to the atomistic and molecular scales