A new approach to assessing the risk to woodland from pest and diseases

Pests and diseases pose a growing threat to woodlands from both endemic sources, and increasingly, from inter-regional transmission. Strong comparative analyses of this threat are needed in order to develop preventative measures. Such analyses should include estimates of the potential worst-case loss from all relevant pest and disease threats to key tree species. Existing approaches tend to focus on individual assessments of the risk from a single pest or disease, or assessments of overall trends. Effective risk management requires more comprehensive quantified assessments of the overall threat to woodland, that includes comparisons of the threat to individual tree species and identification of the potentially most damaging pest and diseases. Such assessments support important policy and management decisions including: species selection; preventative action; and the size of buffers against losses from forest carbon projects. Here we present a new approach that supports a systematic, risk-based assessment of the future threat to a given woodland from all known individual pest and diseases, and to constituent individual tree species, based on a risk management approach taken from the finance sector, but hitherto not applied in an ecological context. Unknown or unidentified pests and diseases can systematically be added in future as identified. We demonstrate the method through a case study evaluating the threat to projects certified under the UK’s Woodland Carbon Code. The approach can be adapted to any woodland resource worldwide. Its novelty lies in the simplification of complex threats, from numerous pests and diseases, to measures that can be used by a range of forest stakeholders

PIMMS (Pragmatic Insertional Mutation Mapping System) laboratory methodology a readily accessible tool for identification of essential genes in Streptococcus

The Pragmatic Insertional Mutation Mapping (PIMMS) laboratory protocol was developed alongside various bioinformatics packages (Blanchard et al., 2015) to enable detection of essential and conditionally essential genes in Streptococcus and related bacteria. This extended the methodology commonly used to locate insertional mutations in individual mutants to the analysis of mutations in populations of bacteria. In Streptococcus uberis, a pyogenic Streptococcus associated with intramammary infection and mastitis in ruminants, the mutagen pGhost9:ISS1 was shown to integrate across the entire genome. Analysis of >80,000 mutations revealed 196 coding sequences, which were not be mutated and a further 67 where mutation only occurred beyond the 90th percentile of the coding sequence. These sequences showed good concordance with sequences within the database of essential genes and typically matched sequences known to be associated with basic cellular functions. Due to the broad utility of this mutagen and the simplicity of the methodology it is anticipated that PIMMS will be of value to a wide range of laboratories in functional genomic analysis of a wide range of Gram positive bacteria (Streptococcus, Enterococcus, and Lactococcus) of medical, veterinary, and industrial significance

Effects of crp deletion in Salmonella enterica serotype Gallinarum

Background. Salmonella enterica serotype Gallinarum (S. Gallinarum) remains an important pathogen of poultry, especially in developing countries. There is a need to develop effective and safe vaccines. In the current study, the effect of crp deletion was investigated with respect to virulence and biochemical properties and the possible use of a deletion mutant as vaccine candidate was preliminarily tested. Methods. Mutants were constructed in S. Gallinarum by P22 transduction from Salmonella Typhimurium (S. Typhimurium) with deletion of the crp gene. The effect was characterized by measuring biochemical properties and by testing of invasion in a chicken loop model and by challenge of six-day-old chickens. Further, birds were immunized with the deleted strain and challenged with the wild type isolate. Results. The crp deletions caused complete attenuation of S. Gallinarum. This was shown by ileal loop experiments not to be due to significantly reduced invasion. Strains with such deletions may have vaccine potential, since oral inoculatoin with S. Gallinarum Δcrp completely protected against challenge with the same dose of wild type S. Gallinarum ten days post immunization. Interestingly, the mutations did not cause the same biochemical and growth changes to the two biotypes of S. Gallinarum. All biochemical effects but not virulence could be complemented by providing an intact crp-gene from S. Typhimurium on the plasmid pSD110. Conclusion. Transduction of a Tn10 disrupted crp gene from S. Typhimurium caused attenuation in S. Gallinarum and mutated strains are possible candidates for live vaccines against fowl typhoid

Consequences of concurrent Ascaridia galli and Escherichia coli infections in chickens

Three experiments were carried out to examine the consequences of concurrent infections with Ascaridia galli and Escherichia coli in chickens raised for table egg production. Characteristic pathological lesions including airsacculitis, peritonitis and/or polyserositis were seen in all groups infected with E. coli. Furthermore, a trend for increased mortality rates was observed in groups infected with both organisms which, however, could not be confirmed statistically. The mean worm burden was significantly lower in combined infection groups compared to groups infected only with A. galli. It was also shown that combined infections of E. coli and A. galli had an added significant negative impact on weight gain

Nitrofurans in relation to salmonella infection in poultry

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