Full-length genomic analysis of korean porcine sapelovirus strains.

Porcine sapelovirus (PSV), a species of the genus Sapelovirus within the family Picornaviridae, is associated with diarrhea, pneumonia, severe neurological disorders, and reproductive failure in pigs. However, the structural features of the complete PSV genome remain largely unknown. To analyze the structural features of PSV genomes, the full-length nucleotide sequences of three Korean PSV strains were determined and analyzed using bioinformatic techniques in comparison with other known PSV strains. The Korean PSV genomes ranged from 7,542 to 7,566 nucleotides excluding the 3' poly(A) tail, and showed the typical picornavirus genome organization; 5'untranslated region (UTR)-L-VP4-VP2-VP3-VP1-2A-2B-2C-3A-3B-3C-3D-3'UTR. Three distinct cis-active RNA elements, the internal ribosome entry site (IRES) in the 5'UTR, a cis-replication element (CRE) in the 2C coding region and 3'UTR were identified and their structures were predicted. Interestingly, the structural features of the CRE and 3'UTR were different between PSV strains. The availability of these first complete genome sequences for PSV strains will facilitate future investigations of the molecular pathogenesis and evolutionary characteristics of PSV

Microbial Ecology of Watery Kimchi

© 2015 Institute of Food Technologists®. This article has been contributed by US Government employees and their work is in the public domain in the USA. The biochemistry and microbial ecology of 2 similar types of watery (mul) kimchi, containing sliced and unsliced radish and vegetables (nabak and dongchimi, respectively), were investigated. Samples from kimchi were fermented at 4, 10, and 20 °C were analyzed by plating on differential and selective media, high-performance liquid chromatography, and high-throughput DNA sequencing of 16S rDNA. Nabak kimchi showed similar trends as dongchimi, with increasing lactic and acetic acids and decreasing pH for each temperature, but differences in microbiota were apparent. Interestingly, bacteria from the Proteobacterium phylum, including Enterobacteriaceae, decreased more rapidly during fermentation at 4 °C in nabak cabbage fermentations compared with dongchimi. Although changes for Proteobacterium and Enterobacteriaceae populations were similar during fermentation at 10 and 20 °C, the homolactic stage of fermentation did not develop for the 4 and 10 °C samples of both nabak and dongchimi during the experiment. These data show the differences in biochemistry and microbial ecology that can result from preparation method and fermentation conditions of the kimchi, which may impact safety (Enterobacteriaceae populations may include pathogenic bacteria) and quality (homolactic fermentation can be undesirable, if too much acid is produced) of the product. In addition, the data also illustrate the need for improved methods for identifying and differentiating closely related lactic acid bacteria species using high-throughput sequencing methods.This work was carried out as part of the international collaborative R&D program funded by the Agency for Korea Natl. Food Cluster (2013), and supported in part by a grant from Pickle Packers Intl. Inc., Washington, D.C., U.S.A. The authors thank the Spanish Government (MECD) for the postdoctoral fellowship support for Dr. E. Medina-Pradas.Peer Reviewe

SALM5 trans-synaptically interacts with LAR-RPTPs in a splicing-dependent manner to regulate synapse development

Synaptogenic adhesion molecules play critical roles in synapse formation. SALM5/Lrfn5, a SALM/Lrfn family adhesion molecule implicated in autism spectrum disorders (ASDs) and schizophrenia, induces presynaptic differentiation in contacting axons, but its presynaptic ligand remains unknown. We found that SALM5 interacts with the Ig domains of LAR family receptor protein tyrosine phosphatases (LAR-RPTPs; LAR, PTPδ, and PTPσ). These interactions are strongly inhibited by the splice insert B in the Ig domain region of LAR-RPTPs, and mediate SALM5-dependent presynaptic differentiation in contacting axons. In addition, SALM5 regulates AMPA receptor-mediated synaptic transmission through mechanisms involving the interaction of postsynaptic SALM5 with presynaptic LAR-RPTPs. These results suggest that postsynaptic SALM5 promotes synapse development by trans-synaptically interacting with presynaptic LAR-RPTPs and is important for the regulation of excitatory synaptic strength

Eutrophication and succession of phytoplankton in reservoir of Korea - monthly variations of plankton community in Lake Soyang

The community of plankton and the environmental factors were investigated in Lake Soyang from January to July 1994. The relationship between transparency and biovolume of phytoplankton was negatively correlated. Phytoplankton dominants in Lake Soyang were Anabaena spp., Microcystis aeruginosa, Asterionella formosa, Asterionella gracillima Melosira distans, Synedra acus, and Asterococcus limneticus, Zooplankton dominants were Polyarthra spp., Keratella spp., Asplanchna placentula, Bosmina coregoni, and Daphnia longispona. Phytoplankton and zooplankton were clearly related each other with respect to biovolume, not to numbers. Microcystis aeruginosa rapidly increased and Daphnia longirostris disappeared in July, because Microcystis aeruginosa secret toxic substances to Daphnia longirostris. Transparency decreased from January to June, but increased in July. The highest number of phytoplankton was obserbed in April, and one month later, the zooplankton reached a maximal level in population density, implicating that spring bloom of phytoplankton was good feeding condition for zooplankton.Article信州大学理学部附属諏訪臨湖実験所報告 9: 175-186(1995)departmental bulletin pape

PRIMARY PRODUCTION OF PHYTOPLANKTON AND MACROPHYTES IN AN EUTROPHIC LAGOON, LAKE KYUNGPO, KOREA

Primary production of phytoplankton and macrophytes are measured in a eutrophic lagoon, Lake Kyungpo, where 86% of the lake is inhabited by macrophytes. Phytoplankton standing crop was high, 40-130 mgChl/m³, but productivity per unit area was suppressed low by the light deficiency due to high content of inorganic suspended particles. Contribution of phytoplankton and macrophytes to the total annual production was 55% and 45%, respectively. Allochthonous organic input estimated from BOD was 36% of total organic matter supply. Nitrogen seems to be the limiting nutrient for phytoplankton, since nitrate is often depleted in the water column of macrophyte-growing region and N/P ratio is low. Turbulence and the vertical transfer of oxygen and nutrient are strongly suppressed by the dense population of macrophytes and the chemocline of high stability caused by saline bottom water.Article信州大学理学部付属諏訪臨湖実験所報告 7: 99-103(1991)departmental bulletin pape

Point Mutation of Hoxd12 in Mice

Purpose: Genes of the HoxD cluster play a major role in vertebrate limb development, and changes that modify the Hoxd12 locus affect other genes also, suggesting that HoxD function is coordinated by a control mechanism involving multiple genes during limb morphogenesis. In this study, mutant phenotypes were produced by treatment of mice with chemical mutagen, N-ethyl-N-nitrosourea (ENU). We analyzed mutant mice exhibiting the specific microdactyly phenotype and examined the genes affected. Materials and Methods: We focused on phenotype characteristics including size, bone formation, and digit morphology of ENU-induced microdactyly mice. The expressions of several molecules were analyzed by genome-wide screening and quantitative real-time PCR to define the affected genes. Results: We report on limb phenotypes of an ENU-induced A-to-C mutation in the Hoxd12 gene, resulting in alanine-to-serine conversion. Microdactyly mice exhibited growth defects in the zeugopod and autopod, shortening of digits, a missing tip of digit I, limb growth affected, and dramatic increases in the expressions of Fgf4 and Lmx1b. However, the expression level of Shh was not changed Hoxd12 point mutated mice. Conclusion: These results suggest that point mutation rather than the entire deletion of Hoxd12, such as in knockout and transgenic mice, causes the abnormal limb phenotype in microdactyly mice. The precise nature of the spectrum of differences requires further investigation.link_to_subscribed_fulltex

EUTROPHICATION OF THE MAJOR RESERVOIRS IN KOREA

Trophic state of several major reservoirs in Korea are reviewed. Most of large reservoirs are mesotrophic to eutrophic, suffering bluegreen algal blooms. Recently many reservoirs are being eutrophied at high rate mainly due to the increase of excretion by livestock in watershed and netcage-type fishfarms within the lake basins. The trophic state changes of Lake Soyang, from oligotrophy to eutrophy in recent 10 years, are presented as a case study of rapid eutrophication. Chlorophyll a concentration increased from ca. 3mg/m³ in early 1980s to 15 mg/m³ in 1989. The dominant phytoplankton species in summer are changed from Peridinium to Anabaena since 1986 and the standing crop of Anabaena has been increasing. Secchidisc depth decreased from 5 to 1m. TP increased from 7 to 20 mgP/m³. The rate of hypolimnetic oxygen deficit increased year to year from 0.028 mgO₂/cm²/day in 1986 to 0.094 in 1989. Fishfarms within the lake are the major phosphorus source in Lake Soyang exceeding the total phosphorus loading from the watershed. This high rate of eutrophication is expected to persist in next decade.Article信州大学理学部付属諏訪臨湖実験所報告 7: 21-29(1991)departmental bulletin pape

A report on operating a nationwide human milk bank in Korea

Purpose : A human milk bank collects, processes, eliminates, and stores breast milk from donors and provides breast milk to those in need. The authors hereby present the experiences and the objective lessons obtained through operating a nationwide human milk bank over a period of 2 years. Methods : The characteristics of the donors and the recipients and the amounts of breast milk donated, processed, and received at the East-West Neo Medical Center Human Milk Bank were investigated from August 2007 to August 2009. Results : The donor pool consisted of 131 first-time donors and 39 repeat donors who made 341 and 127 donations, respectively. Seventy-nine percent of the donors resided in the Seoul-Kyunggi area, and 60% of the donors were in their 30s. Most information and motivation came from the Internet (66%) or television (14%). A total of 2,736 L of breast milk was collected, and 1,979 L were processed. The cumulative number of recipients was 160 preterm or full-term infants and 21 adults, each group receiving the breast milk 337 and 41 times, respectively. In total, infants received 1,663 L and adults received 179 L. Conclusion : Through the present study, the role and importance of a human milk bank in collecting, pasteurizing, and storing surplus breast milk in through sanitary, medically proven methods and providing this breast milk to recipients could be appreciated and reevaluated. The authors believe that a national support system is necessary to expand this practice to a nationwide scale

The First Very Long Baseline Interferometry Image of 44 GHz Methanol Maser with the KVN and VERA Array (KaVA)

We have carried out the first very long baseline interferometry (VLBI) imaging of 44 GHz class I methanol maser (7_{0}-6_{1}A^{+}) associated with a millimeter core MM2 in a massive star-forming region IRAS 18151-1208 with KaVA (KVN and VERA Array), which is a newly combined array of KVN (Korean VLBI Network) and VERA (VLBI Exploration of Radio Astrometry). We have succeeded in imaging compact maser features with a synthesized beam size of 2.7 milliarcseconds x 1.5 milliarcseconds (mas). These features are detected at a limited number of baselines within the length of shorter than approximately 650 km corresponding to 100 Mlambda in the uv-coverage. The central velocity and the velocity width of the 44 GHz methanol maser are consistent with those of the quiescent gas rather than the outflow traced by the SiO thermal line. The minimum component size among the maser features is ~ 5 mas x 2 mas, which corresponds to the linear size of ~ 15 AU x 6 AU assuming a distance of 3 kpc. The brightness temperatures of these features range from ~ 3.5 x 10^{8} to 1.0 x 10^{10} K, which are higher than estimated lower limit from a previous Very Large Array observation with the highest spatial resolution of ~ 50 mas. The 44 GHz class I methanol maser in IRAS 18151-1208 is found to be associated with the MM2 core, which is thought to be less evolved than another millimeter core MM1 associated with the 6.7 GHz class II methanol maser.Comment: 19 pages, 3 figure