Modeling non-stationary, non-axisymmetric heat patterns in DIII-D tokamak

Non-axisymmetric stationary magnetic perturbations lead to the formation of homoclinic tangles near the divertor magnetic saddle in tokamak discharges. These tangles intersect the divertor plates in static helical structures that delimit the regions reached by open magnetic field lines reaching the plasma column and leading the charged particles to the strike surfaces by parallel transport. In this article we introduce a non-axisymmetric rotating magnetic perturbation to model the time development of the three-dimensional magnetic field of a single-null DIII-D tokamak discharge developing a rotating tearing mode. The stable and unstable manifolds of the asymmetric magnetic saddle are calculated through an adaptive method providing the manifold cuts at a given poloidal plane and the strike surfaces. For the modeled shot, the experimental heat pattern and its time development are well described by the rotating unstable manifold, indicating the emergence of homoclinic lobes in a rotating frame due to the plasma instabilities. In the model it is assumed that the magnetic field is created by a stationary axisymmetric plasma current and a set of rotating internal helical filamentary currents. The currents in the filaments are adjusted to match the waveforms of the magnetic probes at the mid-plane and the rotating magnetic field is introduced as a perturbation to the axisymmetric field obtained from a Grad-Shafranov equilibrium reconstruction code

Dynamical thermalization in time-dependent Billiards

Numerical experiments of the statistical evolution of an ensemble of non-interacting particles in a time-dependent billiard with inelastic collisions, reveals the existence of three statistical regimes for the evolution of the speeds ensemble, namely, diffusion plateau, normal growth/exponential decay and stagnation. These regimes are linked numerically to the transition from Gauss-like to Boltzmann-like speed distributions. Further, the different evolution regimes are obtained analytically through velocity-space diffusion analysis. From these calculations the asymptotic root mean square of speed, initial plateau, and the growth/decay rates for intermediate number of collisions are determined in terms of the system parameters. The analytical calculations match the numerical experiments and point to a dynamical mechanism for thermalization, where inelastic collisions and a high-dimensional phase space lead to a bounded diffusion in the velocity space towards a stationary distribution function with a kind of reservoir temperature determined by the boundary oscillation amplitude and the restitution coefficient

ON the CONSERVATION of the VERTICAL ACTION in GALACTIC DISKS

We employ high-resolution N-body simulations of isolated spiral galaxy models, from low-amplitude, multi-armed galaxies to Milky Way-like disks, to estimate the vertical action of ensembles of stars in an axisymmetrical potential. In the multi-armed galaxy the low-amplitude arms represent tiny perturbations of the potential, hence the vertical action for a set of stars is conserved, although after several orbital periods of revolution the conservation degrades significantly. For a Milky Way-like galaxy with vigorous spiral activity and the formation of a bar, our results show that the potential is far from steady, implying that the action is not a constant of motion. Furthermore, because of the presence of high-amplitude arms and the bar, considerable in-plane and vertical heating occurs that forces stars to deviate from near-circular orbits, reducing the degree at which the actions are conserved for individual stars, in agreement with previous results, but also for ensembles of stars. If confirmed, this result has several implications, including the assertion that the thick disk of our Galaxy forms by radial migration of stars, under the assumption of the conservation of the action describing the vertical motion of stars. © 2016. The American Astronomical Society. All rights reserved

Extreme Variability in a Broad Absorption Line Quasar

CRTS J084133.15+200525.8 is an optically bright quasar at z=2.345 that has shown extreme spectral variability over the past decade. Photometrically, the source had a visual magnitude of V~17.3 between 2002 and 2008. Then, over the following five years, the source slowly brightened by approximately one magnitude, to V~16.2. Only ~1 in 10,000 quasars show such extreme variability, as quantified by the extreme parameters derived for this quasar assuming a damped random walk model. A combination of archival and newly acquired spectra reveal the source to be an iron low-ionization broad absorption line (FeLoBAL) quasar with extreme changes in its absorption spectrum. Some absorption features completely disappear over the 9 years of optical spectra, while other features remain essentially unchanged. We report the first definitive redshift for this source, based on the detection of broad H-alpha in a Keck/MOSFIRE spectrum. Absorption systems separated by several 1000 km/s in velocity show coordinated weakening in the depths of their troughs as the continuum flux increases. We interpret the broad absorption line variability to be due to changes in photoionization, rather than due to motion of material along our line of sight. This source highlights one sort of rare transition object that astronomy will now be finding through dedicated time-domain surveys.Comment: 6 pages, 4 figures; accepted for publication in Ap

Male mutation bias is the main force shaping chromosomal substitution rates in monotreme mammals

In many species, spermatogenesis involves more cell divisions than oogenesis, and the male germline, therefore, accumulates more DNA replication errors, a phenomenon known as male mutation bias. The extent of male mutation bias (α) is estimated by comparing substitution rates of the X, Y, and autosomal chromosomes, as these chromosomes spend different proportions of their time in the germlines of the two sexes. Male mutation bias has been characterized in placental and marsupial mammals as well as birds, but analyses in monotremes failed to detect any such bias. Monotremes are an ancient lineage of egg-laying mammals with distinct biological properties, which include unique germline features. Here, we sought to assess the presence and potential characteristics of male mutation bias in platypus and the short- beaked echidna based on substitution rate analyses of X, Y, and autosomes. We established the presence of moderate male mutation bias in monotremes, corresponding to an α value of 2.12–3.69. Given that it has been unclear what proportion of the variation in substitution rates on the different chromosomal classes is really due to differential number of replications, we analyzed the influence of other confounding forces (selection, replication-timing, etc.) and found that male mutation bias is the main force explaining the between-chromosome classes differences in substitution rates. Finally, we estimated the proportion of variation at the gene level in substitution rates that is owing to replication effects and found that this phenomenon can explain >68% of these variations in monotremes, and in control species, rodents, and primates

Perceptual learning and inversion effects: Recognition of prototype-defined familiar checkerboards.

PublishedJournal ArticleResearch Support, Non-U.S. Gov'tThe face inversion effect is a defection in performance in recognizing inverted faces compared with faces presented in their usual upright orientation typically believed to be specific for facial stimuli. McLaren (1997) was able to demonstrate that (a) an inversion effect could be obtained with exemplars drawn from a familiar category, such that upright exemplars were better discriminated than inverted exemplars; and (b) that the inversion effect required that the familiar category be prototype-defined. In this article, we replicate and extend these findings. We show that the inversion effect can be obtained in a standard old/new recognition memory paradigm, demonstrate that it is contingent on familiarization with a prototype-defined category, and establish that the effect is made up of two components. We confirm the advantage for upright exemplars drawn from a familiar, prototype-defined category, and show that there is a disadvantage for inverted exemplars drawn from this category relative to suitable controls. We also provide evidence that there is an N170 event-related potential signature for this effect. These results allow us to integrate a theory of perceptual learning originally proposed by McLaren, Kaye, and Mackintosh (1989) with explanations of the face inversion effect, first reported by Yin.University of ExeterNational Key Fundamental Research (973) Progra

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors

Background: Social contact patterns shape the transmission of respiratory infections spread via close interactions. There is a paucity of observational data from schools and households, particularly in developing countries. Portable wireless sensors can record unbiased proximity events between individuals facing each other, shedding light on pathways of infection transmission. Design and methods: The aim is to characterize face-to-face contact patterns that may shape the transmission of respiratory infections in schools and households in Kilifi, Kenya. Two schools, one each from a rural and urban area, will be purposively selected. From each school, 350 students will be randomly selected proportional to class size and gender to participate. Nine index students from each school will be randomly selected and followed-up to their households. All index household residents will be recruited into the study. A further 3-5 neighbouring households will also be recruited to give a maximum of 350 participants per household setting. The sample size per site is limited by the number of sensors available for data collection. Each participant will wear a wireless proximity sensor lying on their chest area for 7 consecutive days. Data on proximal dyadic interactions will be collected automatically by the sensors only for participants who are face-to-face. Key characteristics of interest include the distribution of degree and the frequency and duration of contacts and their variation in rural and urban areas. These will be stratified by age, gender, role, and day of the week. Expected results: Resultant data will inform on social contact patterns in rural and urban areas of a previously unstudied population. Ensuing data will be used to parameterize mathematical simulation models of transmission of a range of respiratory viruses, including respiratory syncytial virus, and used to explore the impact of intervention measures such as vaccination and social distancing