Past trends, present stocks and possible future state of the fisheries of the Tanzania part of the Lake Victoria

The Tanzania part of Lake Victoria is the most important single fishery resource for the country. Past fishing practice caused disparity between the relative abundance in the catches and in the available stocks by overfishing some species while under-fishing others. Preliminary studies of distribution pattern, biomass estimates, etc, as derived from bollom trawl exploratory data, and the trend of the commercial catch statistics from 1958 to 1970, suggest that many of the commercially preferred species may not have the biotic potential 10 sustain higher yields under present ecological and fishing regimes. Haplochromis and a few other fish might be the only hope. Geographic extension of fishing to deeper waters may not be very promising as species diversificarion and fish density decline with depth. To develop and manage the fisheries, make full use of the resource and ensure economic and biological perpetuation of thc fishery, the appropriate fishing strategy cannot be properly developcd overnight

Batho-spatial distribution pattern and biomass estimate of the major demersal fishes in Lake Victoria

A generalized bottom trawl exploratory survey was carried out on Lake Victoria to: (i) define the distributional pattern and magnitude of the lakewide demersal stocks, (ii) determine the commercial potential of Haplochromis spp. and (iii) evaluate trawling as a commercial fishing technique for Lake Victoria fisheries. Preliminary results suggest that: (i) bottom trawl catches are more representative of the stocks, (ii) species diversification and fish density decrease with increasing mean depth and (iii) at least 80%of the catchable demersal ichthyomass is Haplochromis. Though bottom trawling is a much more efficient fishing technique for the Lake Victoria fisheries, bio-socio-economic consideration impose that mechanization of the fishery should better proceed in graded steps. Besides demographic and nutritional considerations indicate the necessity for rational management and increased direct human utilization of the fishery resource

The multimode covering location problem

In this paper we introduce the Multimode Covering Location Problem. This is a generalization of the Maximal Covering Location Problem that consists in locating a given number of facilities of different types with a limitation on the number of facilities sharing the same site. The problem is challenging and intrinsically much harder than its basic version. Nevertheless, it admits a constant factor approximation guarantee, which can be achieved combining two greedy algorithms. To improve the greedy solutions, we have developed a Variable Neighborhood Search approach, based on an exponential-size neighborhood. This algorithm computes good quality solutions in short computational time. The viability of the approach here proposed is also corroborated by a comparison with a Heuristic Concentration algorithm, which is presently the most effective approach to solve large instances of the Maximal Covering Location Problem

Inclusion of Enclosed Hydration Effects in the Binding Free Energy Estimation of Dopamine D3 Receptor Complexes

Confined hydration and conformational flexibility are some of the challenges encountered for the rational design of selective antagonists of G-protein coupled receptors. We present a set of C3-substituted (-)-stepholidine derivatives as potent binders of the dopamine D3 receptor. The compounds are characterized biochemically, as well as by computer modeling using a novel molecular dynamics-based alchemical binding free energy approach which incorporates the effect of the displacement of enclosed water molecules from the binding site. The free energy of displacement of specific hydration sites is obtained using the Hydration Site Analysis method with explicit solvation. This work underscores the critical role of confined hydration and conformational reorganization in the molecular recognition mechanism of dopamine receptors and illustrates the potential of binding free energy models to represent these key phenomena.Comment: This is the first report of using enclosed hydration in estimating binding free energies of protein-ligand complexes using implicit solvatio

Observation of Fragile-to-Strong Dynamic Crossover in Protein Hydration Water

At low temperatures proteins exist in a glassy state, a state which has no conformational flexibility and shows no biological functions. In a hydrated protein, at and above 220 K, this flexibility is restored and the protein is able to sample more conformational sub-states, thus becomes biologically functional. This 'dynamical' transition of protein is believed to be triggered by its strong coupling with the hydration water, which also shows a similar dynamic transition. Here we demonstrate experimentally that this sudden switch in dynamic behavior of the hydration water on lysozyme occurs precisely at 220 K and can be described as a Fragile-to-Strong dynamic crossover (FSC). At FSC, the structure of hydration water makes a transition from predominantly high-density (more fluid state) to low-density (less fluid state) forms derived from existence of the second critical point at an elevated pressure.Comment: 6 pages (Latex), 4 figures (Postscript

Using Speculative Computation and Parallelizing Techniques to Improve Scheduling of Control based Designs

partially_open5Recent research results have seen the application of parallelizing techniques to high-level synthesis. In particular, the effect of speculative code transformations on mixed control-data flow designs has demonstrated effective results on schedule lengths. In this paper we first analyze the use of the control and data dependence graph as an intermediate representation that provides the possibility of extracting the maximum parallelism. Then we analyze the scheduling problem by formulating an approach based on Integer Linear Programming (ILP) to minimize the number of control steps given the amount of resources. We improve the already proposed ILP scheduling approaches by introducing a new conditional resource sharing constraint which is then extended to the case of speculative computation. The ILP formulation has been solved by using a Branch and Cut framework which provides better results than standard branch and bound techniquesR. Cordone; F. Ferrandi; G. Palermo; M. Santambrogio; D. SciutoR., Cordone; Ferrandi, Fabrizio; Palermo, Gianluca; Santambrogio, MARCO DOMENICO; Sciuto, Donatell

In search of sleep biomarkers of Alzheimer's disease: K-Complexes do not discriminate between patients with mild cognitive impairment and healthy controls

The K-complex (KC) is one of the hallmarks of Non-Rapid Eye Movement (NREM) sleep. Recent observations point to a drastic decrease of spontaneous KCs in Alzheimer's disease (AD). However, no study has investigated when, in the development of AD, this phenomenon starts. The assessment of KC density in mild cognitive impairment (MCI), a clinical condition considered a possible transitional stage between normal cognitive function and probable AD, is still lacking. The aim of the present study was to compare KC density in AD/ MCI patients and healthy controls (HCs), also assessing the relationship between KC density and cognitive decline. Twenty amnesic MCI patients underwent a polysomnographic recording of a nocturnal sleep. Their data were compared to those of previously recorded 20 HCs and 20 AD patients. KCs during stage 2 NREM sleep were visually identified and KC densities of the three groups were compared. AD patients showed a significant KC density decrease compared with MCI patients and HCs, while no differences were observed between MCI patients and HCs. KC density was positively correlated with Mini-Mental State Examination (MMSE) scores. Our results point to the existence of an alteration of KC density only in a full-blown phase of AD, which was not observable in the early stage of the pathology (MCI), but linked with cognitive deterioratio

Probabilistic performance modelling when using partial reconfiguration to accelerate streaming applications with non-deterministic task scheduling

Many streaming applications composed of multiple tasks self-adapt their tasks’ execution at runtime as response to the processed data. This type of application promises a better solution to context switches at the cost of a non-deterministic task scheduling. Partial reconfiguration is a unique feature of FPGAs that not only offers a higher resource reuse but also performance improvements when properly applied. In this paper, a probabilistic approach is used to estimate the acceleration of streaming applications with unknown task schedule thanks to the application of partial reconfiguration. This novel approach provides insights in the feasible acceleration when partially reconfiguring regions of the FPGA are partially reconfigured in order to exploit the available resources by processing multiple tasks in parallel. Moreover, the impact of how different strategies or heuristics affect to the final performance is included in this analysis. As a result, not only an estimation of the achievable acceleration is obtained, but also a guide at the design stage when searching for the highest performance

Molecular dynamics simulation of aqueous solutions of 26-unit segments of p(NIPAAm) and of p(NIPAAm) "doped" with amino acid based comonomers

We have performed 75-ns molecular dynamics (MD) simulations of aqueous solutions of a 26-unit NIPAAm oligomer at two temperatures, 302 and 315 K, below and above the experimentally determined lower critical solution temperature (LCST) of p(NIPAAm). We have been able to show that at 315 K the oligomer assumes a compact form, while it keeps a more extended form at 302 K. A similar behavior has been demonstrated for a similar NIPAAm oligomer, where two units had been substituted by methacryloyl-l-valine (MAVA) comonomers, one of them being charged and one neutral. For another analogous oligomer, where the same units had been substituted by methacryloyl-l-leucine (MALEU) comonomers, no transition from the extended to the more compact conformation has been found within the same simulation time. Statistical analysis of the trajectories indicates that this transition is related to the dynamics of the oligomer backbone, and to the formation of intramolecular hydrogen bonds and water-bridges between distant units of the solute. In the MAVA case, we have also evidenced an important role of the neutral MAVA comonomer in stabilizing the compact coiled structure. In the MALEU case, the corresponding comonomer is not equally efficacious and, possibly, is even hindering the readjustment of the oligomer backbone. Finally the self-diffusion coefficient of water molecules surrounding the oligomers at the two temperatures for selected relevant times is observed to characteristically depend on the distance from the solute molecules

Proteins in saccharides matrices and the trehalose peculiarity: Biochemical and biophysical properties

Immobilization of proteins and other biomolecules in saccharide matrices leads to a series of peculiar properties that are relevant from the point of view of both biochemistry and biophysics, and have important implications on related fields such as food industry, pharmaceutics, and medicine. In the last years, the properties of biomolecules embedded into glassy matrices and/or highly concentrated solutions of saccharides have been thoroughly investigated, at the molecular level, through in vivo, in vitro, and in silico studies. These systems show an outstanding ability to protect biostructures against stress conditions; various mechanisms appear to be at the basis of such bioprotection, that in the case of some sugars (in particular trehalose) is peculiarly effective. Here we review recent results obtained in our and other laboratories on ternary protein- sugar-water systems that have been typically studied in wide ranges of water content and temperature. Data from a large set of complementary experimental techniques provide a consistent description of structural, dynamical and functional properties of these systems, from atomistic to thermodynamic level. In the emerging picture, the stabilizing effect induced on the encapsulated systems might be attributed to a strong biomolecule-matrix coupling, mediated by extended hydrogen-bond networks, whose specific properties are determined by the saccharide composition and structure, and depend on water content