Effect of the Berendsen thermostat on dynamical properties of water

The effect of the Berendsen thermostat on the dynamical properties of bulk SPC/E water is tested by generating power spectra associated with fluctuations in various observables. The Berendsen thermostat is found to be very effective in preserving temporal correlations in fluctuations of tagged particle quantities over a very wide range of frequencies. Even correlations in fluctuations of global properties, such as the total potential energy, are well-preserved for time periods shorter than the thermostat time constant. Deviations in dynamical behaviour from the microcanonical limit do not, however, always decrease smoothly with increasing values of the thermostat time constant but may be somewhat larger for some intermediate values of $\tau_B$, specially in the supercooled regime, which are similar to time scales for slow relaxation processes in bulk water.Comment: 21 pages, 5 figures, To be published in Mol. Phy

Stuttering Min oscillations within E. coli bacteria: A stochastic polymerization model

We have developed a 3D off-lattice stochastic polymerization model to study subcellular oscillation of Min proteins in the bacteria Escherichia coli, and used it to investigate the experimental phenomenon of Min oscillation stuttering. Stuttering was affected by the rate of immediate rebinding of MinE released from depolymerizing filament tips (processivity), protection of depolymerizing filament tips from MinD binding, and fragmentation of MinD filaments due to MinE. Each of processivity, protection, and fragmentation reduces stuttering, speeds oscillations, and reduces MinD filament lengths. Neither processivity or tip-protection were, on their own, sufficient to produce fast stutter-free oscillations. While filament fragmentation could, on its own, lead to fast oscillations with infrequent stuttering; high levels of fragmentation degraded oscillations. The infrequent stuttering observed in standard Min oscillations are consistent with short filaments of MinD, while we expect that mutants that exhibit higher stuttering frequencies will exhibit longer MinD filaments. Increased stuttering rate may be a useful diagnostic to find observable MinD polymerization in experimental conditions.Comment: 21 pages, 7 figures, missing unit for k_f inserte

Constraints on R-parity violating supersymmetry from neutral meson mixing

Upper bounds at the weak scale are put on all $\lambda'_{ijk}\lambda'_{imn}$ type products of R-parity violating supersymmetry that may affect K-Kbar and B-Bbar mixing. We constrain all possible products, including some not considered before, using next-to-leading order QCD corrections to the mixing amplitudes. Constraints are obtained for both real and imaginary parts of the couplings. We also discuss briefly some correlated decay channels which should be investigated in future experiments.Comment: 13 pages, 2 figures, uses revtex. Constraints updated, and new constraints adde

New classes of spin chains from SO(q)(N), Sp(q)(N) Temperley-Lieb algebras: Data transmission and (q, N) parametrized entanglement entropies

International audienceA Temperley-Lieb algebra is extracted from the operator structure of a new class of N2 ×N2 braid matrices presented and studied in previous papers and designated as S O(q)(N), S p(q)(N) for the q-deformed orthogonal and symplectic cases, respectively. Spin chain Hamiltonians are derived from such braid matrices and the corresponding chains are studied. Time evolutions of the chains and the possibility of transition of data encoded in the parameters of mixed states from one end to the other are analyzed. The entanglement entropies S(q, N) of eigenstates of the crucial operator, namely, the q-dependent N2 ×N2 projector P0 appearing in the corresponding Hamiltonian are obtained. Study of entanglements generated under the actions of S O(N), S p(N) braid operators, unitarized with imaginary rapidities (spectral parameters) is presented as a perspective

Spectral Signatures of the Diffusional Anomaly in Water

Analysis of power spectrum profiles for various tagged particle quantities in bulk SPC/E water is used to demonstrate that variations in mobility associated with the diffusional anomaly are mirrored in the exponent of the \onebyf\ region. Monitoring of \onebyf behaviour is shown to be a simple and direct method for linking phenomena on three distinctive length and time scales: the local molecular environment, hydrogen bond network reorganisations and the diffusivity. The results indicate that experimental studies of supercooled water to probe the density dependence of $1/f^\alpha$ spectral features, or equivalent stretched exponential behaviour in time-correlation functions, will be of interest.Comment: 5 Pages, 4 Figure

A new approach to the analysis of a noncommutative Chern-Simons theory

A novel approach to the analysis of a noncommutative Chern--Simons gauge theory with matter coupled in the adjoint representation has been discussed. The analysis is based on a recently proposed closed form Seiberg--Witten map which is exact in the noncommutative parameter.Comment: 9 pages latex, some new results added. To be published in Modern Physics Letters

Circular geodesics and accretion disks in Janis-Newman-Winicour and Gamma metric

We study here circular timelike geodesics in the Janis-Newman-Winicour and Gamma metric spacetimes which contain a strong curvature naked singularity and reduce to the Schwarzschild metric for a specific value of one of the parameters. We show that for both the metrics the range of allowed parameters can be divided into three regimes where structure of the circular geodesics is qualitatively different. It follows that the properties of the accretion disks around such naked singularities can be significantly different from those of disks around black holes. This adds to previous studies showing that if naked singularities exist in nature, their observational signature would be significantly different from that of the black hole