Pion and Kaon Production in Nucleon - Nucleon Collisions

Inclusive cross section for pion production in proton - proton collisions are calculated based on unintegrated parton distribution functions (uPDFs). In addition to purely gluonic terms the present approach includes also quark degrees of freedom. Phenomenological fragmentation functions from the literature are used. The new mechanisms are responsible for $\pi^+$ - $\pi^-$ asymmetry. In contrast to standard collinear approach, application of 2 $\to$ 1 $k_t$ - factorization approach can be extended towards much lower transverse momenta, both at mid and forward rapidity region. The results of the calculation are compared with SPS and RHIC data.Comment: a talk presented by Marta Tichoruk at the international conference MESON2006, Cracow, June 2006, 5 pages, 3 figure

Modelling Backward Travelling Holes in Mixed Traffic Conditions Using an Agent Based Simulation

A spatial queue model in a multi-agent simulation framework is extended by introducing a more realistic behaviour, i.e. backward travelling holes. Space corresponding to a leaving vehicle is not available immediately on the upstream end of the link. Instead, the space travels backward with a constant speed. This space is named a ‘hole’. The resulting dynamics resemble Newell’s simplified kinematic wave model. Furthermore, fundamental diagrams from homogeneous and heterogeneous traffic simulations are presented. The sensitivity of the presented approach is tested with the help of flow density contours

Dijet correlations at RHIC, leading-order ktk_t-factorization approach versus next-to-leading order collinear approach

We compare results of $k_t$-factorization approach and next-to-leading order collinear-factorization approach for dijet correlations in proton-proton collisions at RHIC energies. We discuss correlations in azimuthal angle as well as correlations in two-dimensional space of transverse momenta of two jets. Some $k_t$-factorization subprocesses are included for the first time in the literature. Different unintegrated gluon/parton distributions are used in the $k_t$-factorization approach. The results depend on UGDF/UPDF used. For collinear NLO case the situation depends significantly on whether we consider correlations of any two jets or correlations of leading jets only. In the first case the $2 \to 2$ contributions associated with soft radiations summed up in the $k_t$-factorization approach dominate at $\phi \sim \pi$ and at equal moduli of jet transverse momenta. The collinear NLO $2 \to 3$ contributions dominate over $k_t$-factorization cross section at small relative azimuthal angles as well as for asymmetric transverse momentum configurations. In the second case the NLO contributions vanish at small relative azimuthal angles and/or large jet transverse-momentum disbalance due to simple kinematical constraints. There are no such limitations for the $k_t$-factorization approach. All this makes the two approaches rather complementary. The role of several cuts is discussed and quantified.Comment: 26 pages, 17 figure

Nonphotonic electrons at RHIC within ktk_t-factorization approach and with experimental semileptonic decay functions

We discuss production of nonphotonic electrons in proton-proton scattering at RHIC. The distributions in rapidity and transverse momentum of charm and bottom quarks/antiquarks are calculated in the $k_t$-factorization approach. We use different unintegrated gluon distributions from the literature. The hadronization of heavy quarks is done by means of Peterson and Braaten et al. fragmentation functions. The semileptonic decay functions are found by fitting recent semileptonic data obtained by the CLEO and BABAR collaborations. We get good description of the data at large transverse momenta of electrons and find a missing strength concentrated at small transverse momenta of electrons. Plausible missing mechanisms are discussed.Comment: 16 pages, 11 figure

Extending scientific computing system with structural quantum programming capabilities

We present a basic high-level structures used for developing quantum programming languages. The presented structures are commonly used in many existing quantum programming languages and we use quantum pseudo-code based on QCL quantum programming language to describe them. We also present the implementation of introduced structures in GNU Octave language for scientific computing. Procedures used in the implementation are available as a package quantum-octave, providing a library of functions, which facilitates the simulation of quantum computing. This package allows also to incorporate high-level programming concepts into the simulation in GNU Octave and Matlab. As such it connects features unique for high-level quantum programming languages, with the full palette of efficient computational routines commonly available in modern scientific computing systems. To present the major features of the described package we provide the implementation of selected quantum algorithms. We also show how quantum errors can be taken into account during the simulation of quantum algorithms using quantum-octave package. This is possible thanks to the ability to operate on density matrices

Markovian MC simulation of QCD evolution at NLO level with minimum k_T

We present two Monte Carlo algorithms of the Markovian type which solve the modified QCD evolution equations at the NLO level. The modifications with respect to the standard DGLAP evolution concern the argument of the strong coupling constant alpha_S. We analyze the z - dependent argument and then the k_T - dependent one. The evolution time variable is identified with the rapidity. The two algorithms are tested to the 0.05% precision level. We find that the NLO corrections in the evolution of parton momentum distributions with k_T - dependent coupling constant are of the order of 10 to 20%, and in a small x region even up to 30%, with respect to the LO contributions.Comment: 32 pages, 9 pdf figure

Experimentally feasible measures of distance between quantum operations

We present two measures of distance between quantum processes based on the superfidelity, introduced recently to provide an upper bound for quantum fidelity. We show that the introduced measures partially fulfill the requirements for distance measure between quantum processes. We also argue that they can be especially useful as diagnostic measures to get preliminary knowledge about imperfections in an experimental setup. In particular we provide quantum circuit which can be used to measure the superfidelity between quantum processes. As the behavior of the superfidelity between quantum processes is crucial for the properties of the introduced measures, we study its behavior for several families of quantum channels. We calculate superfidelity between arbitrary one-qubit channels using affine parametrization and superfidelity between generalized Pauli channels in arbitrary dimensions. Statistical behavior of the proposed quantities for the ensembles of quantum operations in low dimensions indicates that the proposed measures can be indeed used to distinguish quantum processes.Comment: 9 pages, 4 figure

Complex X chromosome rearrangement associated with multiorgan autoimmunity

BACKGROUND: Turner syndrome, a congenital condition that affects 1/2,500 births, results from absence or structural alteration of the second sex chromosome. Turner syndrome is usually associated with short stature, gonadal dysgenesis and variable dysmorphic features. The classical 45,X karyotype accounts approximately for half of all patients, the remainder exhibit mosaicism or structural abnormalities of the X chromosome. However, complex intra-X chromosomal rearrangements involving more than three breakpoints are extremely rare. RESULTS: We present a unique case of a novel complex X chromosome rearrangement in a young female patient presenting successively a wide range of autoimmune diseases including insulin dependent diabetes mellitus, Hashimoto's thyroiditis, celiac disease, anaemia perniciosa, possible inner ear disease and severe hair loss. For the genetic evaluation, conventional cytogenetic analysis and FISH with different X specific probes were initially performed. The complexity of these results and the variety of autoimmune problems of the patient prompted us to identify the exact composition and breakpoints of the rearranged X as well as methylation status of the X chromosomes. The high resolution array-CGH (assembly GRCh37/hg19) detected single copy for the whole chromosome X short arm. Two different sized segments of Xq arm were present in three copies: one large size of 80,3 Mb from Xq11.1 to Xq27.3 region and another smaller (11,1 Mb) from Xq27.3 to Xq28 region. An 1,6 Mb Xq27.3 region of the long arm was present in two copies. Southern blot analysis identified a skewed X inactivation with approximately 70:30 % ratios of methylated/unmethylated fragments. The G-band and FISH patterns of the rearranged X suggested the aspect of a restructured i(Xq) chromosome which was shattered and fortuitously repaired. The X-STR genotype analysis of the family detected that the patient inherited intact maternal X chromosome and a rearranged paternal X chromosome. The multiple Xq breakages and fusions as well as inverted duplication would have been expected to cause a severe Turner phenotype. However, the patient lacks many of the classic somatic features of Turner syndrome, instead she presented multiorgan autoimmune diseases. CONCLUSIONS: The clinical data of the presented patient suggest that fragmentation of the i(Xq) chromosome elevates the risk of autoimmune diseases

Proteome turnover in the bloodstream and procyclic forms of <i>Trypanosoma brucei</i> measured by quantitative proteomics

Background: Cellular proteins vary significantly in both abundance and turnover rates. These parameters depend upon their rates of synthesis and degradation and it is useful to have access to data on protein turnover rates when, for example, designing genetic knock-down experiments or assessing the potential usefulness of covalent enzyme inhibitors. Little is known about the nature and regulation of protein turnover in Trypanosoma brucei, the etiological agent of human and animal African trypanosomiasis.Methods: To establish baseline data on T.brucei proteome turnover, a Stable Isotope Labelling with Amino acids in Cell culture (SILAC)-based mass spectrometry analysis was performed to reveal the synthesis and degradation profiles for thousands of proteins in the bloodstream and procyclic forms of this parasite.Results: This analysis revealed a slower average turnover rate of the procyclic form proteome relative to the bloodstream proteome. As expected, many of the proteins with the fastest turnover rates have functions in the cell cycle and in the regulation of cytokinesis in both bloodstream and procyclic forms. Moreover, the cellular localization of T. brucei proteins correlates with their turnover, with mitochondrial and glycosomal proteins exhibiting slower than average turnover rates.Conclusions: The intention of this study is to provide the trypanosome research community with a resource for protein turnover data for any protein or group of proteins. To this end, bioinformatic analyses of these data are made available via an open-access web resource with data visualization functions.</p