Positional information, positional error, and read-out precision in morphogenesis: a mathematical framework

The concept of positional information is central to our understanding of how cells in a multicellular structure determine their developmental fates. Nevertheless, positional information has neither been defined mathematically nor quantified in a principled way. Here we provide an information-theoretic definition in the context of developmental gene expression patterns and examine which features of expression patterns increase or decrease positional information. We connect positional information with the concept of positional error and develop tools to directly measure information and error from experimental data. We illustrate our framework for the case of gap gene expression patterns in the early Drosophila embryo and show how information that is distributed among only four genes is sufficient to determine developmental fates with single cell resolution. Our approach can be generalized to a variety of different model systems; procedures and examples are discussed in detail

Structural Descriptions in Human-Assisted Robot Visual Learning

The paper presents an approach to using structural descriptions, obtained through a human-robot tutoring dialogue, as labels for the visual object models a robot learns. The paper shows how structural descriptions enable relating models for different aspects of one and the same object, and how being able to relate descriptions for visual models and discourse referents enables incremental updating of model descriptions through dialogue (either robot- or human-initiated). The approach has been implemented in an integrated architecture for human-assisted robot visual learning

Dynamic Kerr effect responses in the Terahertz-range

Dynamic Kerr effect measurements provide a simple realization of a nonlinear experiment. We propose a field-off experiment where an electric field of one or several sinusoidal cycles is applied to a sample in thermal equilibrium. Afterwards, the evolution of the polarizability is measured. If such an experiment is performed in the Terahertz-range it might provide valuable information about the low-frequency dynamics in disordered systems. We treat these dynamics in terms of a Brownian oscillator model and calculate the Kerr effect response. It is shown that frequency-selective behaviour can be expected. In the interesting case of underdamped vibrational motion we find that the frequency-dependence of the phonon-damping can be determined from the experiment. Also the behaviour of overdamped relaxational modes is discussed. For typical glassy materials we estimate the magnitude of all relevant quantities, which we believe to be helpful in experimental realizations.Comment: 26 pages incl. 5 figure

Optimal decoding of information from a genetic network

Gene expression levels carry information about signals that have functional significance for the organism. Using the gap gene network in the fruit fly embryo as an example, we show how this information can be decoded, building a dictionary that translates expression levels into a map of implied positions. The optimal decoder makes use of graded variations in absolute expression level, resulting in positional estimates that are precise to ~1% of the embryo's length. We test this optimal decoder by analyzing gap gene expression in embryos lacking some of the primary maternal inputs to the network. The resulting maps are distorted, and these distortions predict, with no free parameters, the positions of expression stripes for the pair-rule genes in the mutant embryos

How can Australian businesses win in the information technology stakes?

Australia is one of the highest ranking countries in the world for use of information technology (IT), being third highest for IT investment among OECD (Organisation for Economic Co-operation and Development) countries, yet there are wide differences within Australia in IT use. Some Australian businesses are winning higher productivity gains from the use of IT than others. Why? How can other organisations do better? The lecture will show how above average gains have occurred in some leading firms and in industries such as the Wholesale Trade and Finance and Insurance. Case studies will show how some firms have reaped the benefits of IT investment. Environmental pre-conditions affecting the odds for success, including government policies and infrastructure will also be highlighted. The aim of the lecture is to show how all organisations can adapt the lessons learned in order to improve their own business's position in the competitive race

Attention modulates TMS-locked alpha oscillations in the visual cortex

Cortical oscillations, such as 8–12 Hz alpha-band activity, are thought to subserve gating of information processing in the human brain. While most of the supporting evidence is correlational, causal evidence comes from attempts to externally drive (“entrain”) these oscillations by transcranial magnetic stimulation (TMS). Indeed, the frequency profile of TMS-evoked potentials (TEPs) closely resembles that of oscillations spontaneously emerging in the same brain region. However, it is unclear whether TMS-locked and spontaneous oscillations are produced by the same neuronal mechanisms. If so, they should react in a similar manner to top-down modulation by endogenous attention. To test this prediction, we assessed the alpha-like EEG response to TMS of the visual cortex during periods of high and low visual attention while participants attended to either the visual or auditory modality in a cross-modal attention task. We observed a TMS-locked local oscillatory alpha response lasting several cycles after TMS (but not after sham stimulation). Importantly, TMS-locked alpha power was suppressed during deployment of visual relative to auditory attention, mirroring spontaneous alpha amplitudes. In addition, the early N40 TEP component, located at the stimulation site, was amplified by visual attention. The extent of attentional modulation for both TMS-locked alpha power and N40 amplitude did depend, with opposite sign, on the individual ability to modulate spontaneous alpha power at the stimulation site. We therefore argue that TMS-locked and spontaneous oscillations are of common neurophysiological origin, whereas the N40 TEP component may serve as an index of current cortical excitability at the time of stimulation

Heat shock factor 1 regulates lifespan as distinct from disease onset in prion disease

Prion diseases are fatal, transmissible, neurodegenerative diseases caused by the misfolding of the prion protein (PrP). At present, the molecular pathways underlying prion-mediated neurotoxicity are largely unknown. We hypothesized that the transcriptional regulator of the stress response, heat shock factor 1 (HSF1), would play an important role in prion disease. Uninoculated HSF1 knockout (KO) mice used in our study do not show signs of neurodegeneration as assessed by survival, motor performance, or histopathology. When inoculated with Rocky Mountain Laboratory (RML) prions HSF1 KO mice had a dramatically shortened lifespan, succumbing to disease ≈20% faster than controls. Surprisingly, both the onset of home-cage behavioral symptoms and pathological alterations occurred at a similar time in HSF1 KO and control mice. The accumulation of proteinase K (PK)-resistant PrP also occurred with similar kinetics and prion infectivity accrued at an equal or slower rate. Thus, HSF1 provides an important protective function that is specifically manifest after the onset of behavioral symptoms of prion disease

Rapid changes in ice core gas records Part 2: Understanding the rapid rise in atmospheric CO2 at the onset of the Bølling/Allerød

During the last glacial/interglacial transition the Earth's climate underwent rapid changes around 14.6 kyr ago. Temperature proxies from ice cores revealed the onset of the Bølling/Allerød (B/A) warm period in the north and the start of the Antarctic Cold Reversal in the south. Furthermore, the B/A is accompanied by a rapid sea level rise of about 20 m during meltwater pulse (MWP) 1A, whose exact timing is matter of current debate. In situ measured CO₂ in the EPICA Dome C (EDC) ice core also revealed a remarkable jump of 10±1 ppmv in 230 yr at the same time. Allowing for the age distribution of CO₂ in firn we here show, that atmospheric CO₂ rose by 20–35 ppmv in less than 200 yr, which is a factor of 2–3.5 larger than the CO₂ signal recorded in situ in EDC. Based on the estimated airborne fraction of 0.17 of CO₂ we infer that 125 Pg of carbon need to be released to the atmosphere to produce such a peak. Most of the carbon might have been activated as consequence of continental shelf flooding during MWP-1A. This impact of rapid sea level rise on atmospheric CO₂ distinguishes the B/A from other Dansgaard/Oeschger events of the last 60 kyr, potentially defining the point of no return during the last deglaciation

Real Exchange Rates, Preferences, and Incomplete Markets: Evidence, 1961-2001

Many international macroeconomic models link the real exchange rate to a ratio of marginal utilities. We examine this link empirically, allowing the marginal utility of consumption to depend on government expenditure, real money balances, or external habit. We also consider two environments with incomplete asset markets; one with exogenously missing markets but an endogenous discount rate that anchors the distribution of wealth and one with endogenous market segmentation. Although none of these satisfies theoretical and over-identifying restrictions for every country, utility with external habit persistence provides the best match with real exchange rates for OECD countries between 1961 and 2001.real exchange rate, consumption, marginal utility