Managing Access to Biobanks:How Can We Reconcile Privacy and Public Interests in Genetic Research?

This article is concerned with the ultimate objectives of genetic biobanks set up to promote the public interest—being the sharing of samples and data for medical research—and the consequences for personal privacy of realising them. Our aim is to chart the values, interests and principles in play, to consider the challenges of realizing biobanking objectives on a global scale, and to propose viable ways forward that ensure, as far as possible, that access provisions remain fit for purpose throughout the entire life of a biobank, while adequately protecting the privacy interests at stake. It is argued that key features in any robust access model must include mechanisms to (a) maintain participant trust in management of the resource and to measure and respond to participants’ expectations, (b) facilitate and promote the sharing of benefits, and (c) respond timeously and effectively to new challenges

Immunoreactivity of the AAA plus chaperone ClpB from Leptospira interrogans with sera from Leptospira-infected animals

Citation: Krajewska, J., Arent, Z., Wieckowski, D., Zolkiewski, M., & Kedzierska-Mieszkowska, S. (2016). Immunoreactivity of the AAA plus chaperone ClpB from Leptospira interrogans with sera from Leptospira-infected animals. Bmc Microbiology, 16, 8. doi:10.1186/s12866-016-0774-8Leptospira interrogans is a spirochaete responsible for leptospirosis in mammals. The molecular mechanisms of the Leptospira virulence remain mostly unknown. Recently, it has been demonstrated that L. interrogans ClpB (ClpB(Li)) is essential for bacterial survival under stressful conditions and also during infection. The aim of this study was to provide further insight into the role of ClpB in L. interrogans and answer the question whether ClpB(Li) as a potential virulence factor may be a target of the humoral immune response during leptospiral infections in mammals. Results: ClpB(Li) consists of 860 amino acid residues with a predicted molecular mass of 96.3 kDa and shows multi-domain organization similar to that of the well-characterized ClpB from Escherichia coli. The amino acid sequence identity between ClpB(Li) and E. coli ClpB is 52 %. The coding sequence of the clpB(Li) gene was cloned and expressed in E. coli BL21(DE3) strain. Immunoreactivity of the recombinant ClpB(Li) protein was assessed with the sera collected from Leptospira-infected animals and uninfected healthy controls. Western blotting and ELISA analysis demonstrated that ClpB(Li) activates the host immune system, as evidenced by an increased level of antibodies against ClpB(Li) in the sera from infected animals, as compared to the control group. Additionally, ClpB(Li) was found in kidney tissues of Leptospira-infected hamsters. Conclusions: ClpB(Li) is both synthesized and immunogenic during the infectious process, further supporting its involvement in the pathogenicity of Leptospira. In addition, the immunological properties of ClpB(Li) point to its potential value as a diagnostic antigen for the detection of leptospirosis

Breit-Wheeler Process in Intense Short Laser Pulses

Energy-angular distributions of electron-positron pair creation in collisions of a laser beam and a nonlaser photon are calculated using the $S$-matrix formalism. The laser field is modeled as a finite pulse, similar to the formulation introduced in our recent paper in the context of Compton scattering [Phys. Rev. A {\bf 85}, 062102 (2012)]. The nonperturbative regime of pair creation is considered here. The energy spectra of created particles are compared with the corresponding spectra obtained using the modulated plane wave approximation for the driving laser field. A very good agreement in these two cases is observed, provided that the laser pulse is sufficiently long. For short pulse durations, this agreement breaks down. The sensitivity of pair production to the polarization of a driving pulse is also investigated. We show that in the nonperturbative regime, the pair creation yields depend on the polarization of the pulse, reaching their maximal values for the linear polarization. Therefore, we focus on this case. Specifically, we analyze the dependence of pair creation on the relative configuration of linear polarizations of the laser pulse and the nonlaser photon. Lastly, we investigate the carrier-envelope phase effect on angular distributions of created particles, suggesting the possibility of phase control in relation to the pair creation processes.Comment: 13 pages, 8 figure

Kinetics of the urea–urease clock reaction with urease immobilized in hydrogel beads

Feedback driven by enzyme catalyzed reactions occurs widely in biology and has been well characterized in single celled organisms such as yeast. There are still few examples of robust enzyme oscillators in vitro that might be used to study nonlinear dynamical behavior. One of the simplest is the urea–urease reaction that displays autocatalysis driven by the increase in pH accompanying the production of ammonia. A clock reaction was obtained from low to high pH in batch reactor and bistability and oscillations were reported in a continuous flow rector. However, the oscillations were found to be irreproducible and one contributing factor may be the lack of stability of the enzyme in solution at room temperature. Here, we investigated the effect of immobilizing urease in thiol-poly(ethylene glycol) acrylate (PEGDA) hydrogel beads, prepared using emulsion polymerization, on the urea–urease reaction. The resultant mm-sized beads were found to reproduce the pH clock and, under the conditions employed here, the stability of the enzyme was increased from hours to days

R. v. Conway: UnChartered Territory for Administrative Tribunals

In R. v. Conway, the Supreme Court of Canada reformulated and simplified the test for when an administrative tribunal is a court of competent jurisdiction for the purposes of considering constitutional questions and ordering Charter remedies. Previously, there were two different tests for when a tribunal was a court of competent jurisdiction: one for when an administrative tribunal was considering whether a legislative provision was constitutional, and a second when it was considering whether it had jurisdiction to grant a Charter remedy. Conway amalgamated and simplified the tests. In so doing, the Supreme Court made clear that administrative tribunals should play a primary role in determining Charter issues and that the fundamental issue is whether a tribunal can consider questions of law. It is possible, under Conway, that many more tribunals will be considered courts of competent jurisdiction. However, as the powers of tribunals are constrained by the legislative scheme, in practice the change may not be as significant as initially thought

R. v. Conway: UnChartered Territory for Administrative Tribunals

In R. v. Conway, the Supreme Court of Canada reformulated and simplified the test for when an administrative tribunal is a court of competent jurisdiction for the purposes of considering constitutional questions and ordering Charter remedies. Previously, there were two different tests for when a tribunal was a court of competent jurisdiction: one for when an administrative tribunal was considering whether a legislative provision was constitutional, and a second when it was considering whether it had jurisdiction to grant a Charter remedy. Conway amalgamated and simplified the tests. In so doing, the Supreme Court made clear that administrative tribunals should play a primary role in determining Charter issues and that the fundamental issue is whether a tribunal can consider questions of law. It is possible, under Conway, that many more tribunals will be considered courts of competent jurisdiction. However, as the powers of tribunals are constrained by the legislative scheme, in practice the change may not be as significant as initially thought

Upwelling events, coastal offshore exchange, links to biogeochemical processes - Highlights from the Baltic Sea Sciences Congress at Rostock University, Germany, 19-22 March 2007

The Baltic Sea Science Congress was held at Rostock University, Germany, from 19 to 22 March 2007. In the session entitled"Upwelling events, coastal offshore exchange, links to biogeochemical processes" 20 presentations were given,including 7 talks and 13 posters related to the theme of the session.This paper summarises new findings of the upwelling-related studies reported in the session. It deals with investigationsbased on the use of in situ and remote sensing measurements as well as numerical modelling tools. The biogeochemicalimplications of upwelling are also discussed.Our knowledge of the fine structure and dynamic considerations of upwelling has increased in recent decades with the advent ofhigh-resolution modern measurement techniques and modelling studies. The forcing and the overall structure, duration and intensity ofupwelling events are understood quite well. However, the quantification of related transports and the contribution to the overall mixingof upwelling requires further research. Furthermore, our knowledge of the links between upwelling and biogeochemical processes is stillincomplete. Numerical modelling has advanced to the extent that horizontal resolutions of c. 0.5 nautical miles can now be applied,which allows the complete spectrum of meso-scale features to be described. Even the development of filaments can be describedrealistically in comparison with high-resolution satellite data.But the effect of upwelling at a basin scale and possible changes under changing climatic conditions remain open questions

Intracellular zinc depletion induces caspase activation and p21Waf1/Cip1 cleavage in human epithelial cell lines

To better understand the mechanisms by which zinc deficiency induces epithelial cell death, studies were done of the effects of intracellular zinc depletion induced by the zinc chelator TPEN on apoptosis-related events in human malignant epithelial cell lines LIM1215 (colonic), NCI-H292 (bronchial), and A549 (alveolar type II). In TPEN-treated cells, depletion of zinc was followed by activation of caspase-3 (as demonstrated by enzymatic assay and Western blotting), DNA fragmentation, and morphologic changes. Increase in caspase-3 activity began 1–2 h after addition of TPEN, suggesting that zinc may suppress a step just before the activation of this caspase. Caspase-6, a mediator of caspase-3 processing, also increased, but later than caspase-3. Effects of TPEN on apoptosis were completely prevented by exogenous ZnSO4 and partially prevented by peptide caspase inhibitors. A critical substrate of caspase-3 may be the cell cycle regulator p21Waf1/Cip1, which was rapidly cleaved in TPEN-treated cells to a 15-kDa fragment before further degradation.F. Chai, A. Q. Truong-Tran, A. Evdokiou, G. P. Young and P. D. Zalewsk

R. v. Comeau: A Crack In the Wall?

In 2012, one man’s journey from New Brunswick to Quebec in pursuit of cheap beer sparked a fierce constitutional debate about the role of interprovincial trade in Canada. In a booze run that has since made Canadian legal history, G rard Comeau drove from his home in Tracadie, New Brunswick to the Listiguj First Nation Indian Reserve in Quebec, where alcohol is sold at a cheap price. While there, he stocked up on 15 cases of beer and three bottles of liquor, purchased from three different stores. Unbeknownst to him, Mr. Comeau had been under surveillance in his sojourn into Quebec. When he crossed back over into New Brunswick, Mr. Comeau’s vehicle was intercepted by the RCMP, the alcohol was seized, and Mr. Comeau was charged and fined close to $300 under section 134(b) of the New Brunswick Liquor Control Act, which prohibits possession of liquor not purchased from the New Brunswick Liquor Corporation in excess of a prescribed amount

Anemia in Patients With Resistance to Thyroid Hormone α: A Role for Thyroid Hormone Receptor α in Human Erythropoiesis

Context: Patients with resistance to thyroid hormone (TH) α (RTHα) are characterized by growth retardation, macrocephaly, constipation, and abnormal thyroid function tests. In addition, almost all RTHα patients have mild anemia, the pathogenesis of which is unknown. Animal studies suggest an important role for TH and TH receptor (TR)α in erythropoiesis.Objective: To investigate whether a defect in TRα affects the maturation of red blood cells in RTHα patients.Design, Setting, and Patients: Cultures of primary human erythroid progenitor cells (HEPs), from peripheral blood of RTHα patients (n = 11) harboring different inactivating mutations in TRα (P398R, F397fs406X, C392X, R384H, A382fs388X, A263V, A263S), were compared with healthy controls (n = 11). During differentiation, erythroid cells become smaller, accumulate hemoglobin, and express different cell surface markers. We assessed cell number and cell size, and used cell staining and fluorescence-activated cell sorter analysis to monitor maturation at different time points.Results: After ∼14 days of ex vivo expansion, both control and patient-derived progenitors differentiated spontaneously. However, RTHα-derived cells differentiated more slowly. During spontaneous differentiation, RTHα-derived HEPs were larger, more positive for c-Kit (a proliferation marker), and less positive for glycophorin A (a differentiation marker). The degree of abnormal spontaneous maturation of RTHα-derived progenitors did not correlate with severity of underlying TRα defect. Both control and RTHα-derived progenitors responded similarly when differentiation was induced. T3 exposure accelerated differentiation of both control- and RTHα patient-derived HEPs.Conclusions: Inactivating mutations in human TRα affect the balance between proliferation and differentiation of progenitor cells d