Resolving Confusion in the Use of Concepts and Terminology in Intrapuparial Development Studies of Cyclorrhaphous Diptera

This is freely available on the journal website.The attached document is the pre-print/pre-refereeing [Author's original version] version of the article. This article has been accepted for publication in Journal of Medical Entomology, Vol.53(6), 2016, published by Oxford University Press. DOI: http://dx.doi.org/10.1093/jme/tjw0

Looking into the puparium: Micro-CT visualization of the internal morphological changes during metamorphosis of the blow fly, Calliphora vicina , with the first quantitative analysis of organ development in cyclorrhaphous dipterans

Uploaded is the initial online version of this Open Access manuscript.This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. VC 2017 The Authors Journal of Morphology Published by Wiley Periodicals, Inc. This is the published version of the article

On quantum group symmetry and Bethe ansatz for the asymmetric twin spin chain with integrable boundary

Motivated by a study of the crossing symmetry of the `gemini' representation of the affine Hecke algebra we give a construction for crossing tensor space representations of ordinary Hecke algebras. These representations build solutions to the Yang--Baxter equation satisfying the crossing condition (that is, integrable quantum spin chains). We show that every crossing representation of the Temperley--Lieb algebra appears in this construction, and in particular that this construction builds new representations. We extend these to new representations of the blob algebra, which build new solutions to the Boundary Yang--Baxter equation (i.e. open spin chains with integrable boundary conditions). We prove that the open spin chain Hamiltonian derived from Sklyanin's commuting transfer matrix using such a solution can always be expressed as the representation of an element of the blob algebra, and determine this element. We determine the representation theory (irreducible content) of the new representations and hence show that all such Hamiltonians have the same spectrum up to multiplicity, for any given value of the algebraic boundary parameter. (A corollary is that our models have the same spectrum as the open XXZ chain with nondiagonal boundary -- despite differing from this model in having reference states.) Using this multiplicity data, and other ideas, we investigate the underlying quantum group symmetry of the new Hamiltonians. We derive the form of the spectrum and the Bethe ansatz equations.Comment: 43 pages, multiple figure

Quantum dynamics in photonic crystals

Employing a recently developed method that is numerically accurate within a model space simulating the real-time dynamics of few-body systems interacting with macroscopic environmental quantum fields, we analyze the full dynamics of an atomic system coupled to a continuum light-field with a gapped spectral density. This is a situation encountered, for example, in the radiation field in a photonic crystal, whose analysis has been so far been confined to limiting cases due to the lack of suitable numerical techniques. We show that both atomic population and coherence dynamics can drastically deviate from the results predicted when using the rotating wave approximation, particularly in the strong coupling regime. Experimental conditions required to observe these corrections are also discussed.Comment: 5 pages, 2 figures Updated with published versio

Universal Shape Replicators via Self-Assembly with Attractive and Repulsive Forces

We show how to design a universal shape replicator in a self- assembly system with both attractive and repulsive forces. More precisely, we show that there is a universal set of constant-size objects that, when added to any unknown holefree polyomino shape, produces an unbounded number of copies of that shape (plus constant-size garbage objects). The constant-size objects can be easily constructed from a constant number of individual tile types using a constant number of preprocessing self-assembly steps. Our construction uses the well-studied 2-Handed Assembly Model (2HAM) of tile self-assembly, in the simple model where glues interact only with identical glues, allowing glue strengths that are either positive (attractive) or negative (repulsive), and constant temperature (required glue strength for parts to hold together). We also require that the given shape has specified glue types on its surface, and that the feature size (smallest distance between nonincident edges) is bounded below by a constant. Shape replication necessarily requires a self-assembly model where parts can both attach and detach, and this construction is the first to do so using the natural model of negative/repulsive glues (also studied before for other problems such as fuel-efficient computation); previous replication constructions require more powerful global operations such as an “enzyme” that destroys a subset of the tile types.National Science Foundation (U.S.) (Grant EFRI1240383)National Science Foundation (U.S.) (Grant CCF-1138967

Non-Equilibrium Large N Yukawa Dynamics: marching through the Landau pole

The non-equilibrium dynamics of a Yukawa theory with N fermions coupled to a scalar field is studied in the large N limit with the goal of comparing the dynamics predicted from the renormalization group improved effective potential to that obtained including the fermionic backreaction. The effective potential is of the Coleman-Weinberg type. Its renormalization group improvement is unbounded from below and features a Landau pole. When viewed self-consistently, the initial time singularity does not arise. The different regimes of the dynamics of the fully renormalized theory are studied both analytically and numerically. Despite the existence of a Landau pole in the model, the dynamics of the mean field is smooth as it passes the location of the pole. This is a consequence of a remarkable cancellation between the effective potential and the dynamical chiral condensate. The asymptotic evolution is effectively described by a quartic upright effective potential. In all regimes, profuse particle production results in the formation of a dense fermionic plasma with occupation numbers nearly saturated up to a scale of the order of the mean field. This can be interpreted as a chemical potential. We discuss the implications of these results for cosmological preheating.Comment: 36 pages, 14 figures, LaTeX, submitted to Physical Review

Universal Shape Replicators via Self-Assembly with Attractive and Repulsive Forces

We show how to design a universal shape replicator in a self- assembly system with both attractive and repulsive forces. More precisely, we show that there is a universal set of constant-size objects that, when added to any unknown holefree polyomino shape, produces an unbounded number of copies of that shape (plus constant-size garbage objects). The constant-size objects can be easily constructed from a constant number of individual tile types using a constant number of preprocessing self-assembly steps. Our construction uses the well-studied 2-Handed Assembly Model (2HAM) of tile self-assembly, in the simple model where glues interact only with identical glues, allowing glue strengths that are either positive (attractive) or negative (repulsive), and constant temperature (required glue strength for parts to hold together). We also require that the given shape has specified glue types on its surface, and that the feature size (smallest distance between nonincident edges) is bounded below by a constant. Shape replication necessarily requires a self-assembly model where parts can both attach and detach, and this construction is the first to do so using the natural model of negative/repulsive glues (also studied before for other problems such as fuel-efficient computation); previous replication constructions require more powerful global operations such as an “enzyme” that destroys a subset of the tile types.National Science Foundation (U.S.) (Grant EFRI1240383)National Science Foundation (U.S.) (Grant CCF-1138967

Electron affinities of the first- and second- row atoms: benchmark ab initio and density functional calculations

A benchmark ab initio and density functional (DFT) study has been carried out on the electron affinities of the first- and second-row atoms. The ab initio study involves basis sets of $spdfgh$ and $spdfghi$ quality, extrapolations to the 1-particle basis set limit, and a combination of the CCSD(T), CCSDT, and full CI electron correlation methods. Scalar relativistic and spin-orbit coupling effects were taken into account. On average, the best ab initio results agree to better than 0.001 eV with the most recent experimental results. Correcting for imperfections in the CCSD(T) method improves the mean absolute error by an order of magnitude, while for accurate results on the second-row atoms inclusion of relativistic corrections is essential. The latter are significantly overestimated at the SCF level; for accurate spin-orbit splitting constants of second-row atoms inclusion of (2s,2p) correlation is essential. In the DFT calculations it is found that results for the 1st-row atoms are very sensitive to the exchange functional, while those for second-row atoms are rather more sensitive to the correlation functional. While the LYP correlation functional works best for first-row atoms, its PW91 counterpart appears to be preferable for second-row atoms. Among ``pure DFT'' (nonhybrid) functionals, G96PW91 (Gill 1996 exchange combined with Perdew-Wang 1991 correlation) puts in the best overall performance. The best results overall are obtained with the 1-parameter hybrid modified Perdew-Wang (mPW1) exchange functionals of Adamo and Barone [J. Chem. Phys. {\bf 108}, 664 (1998)], with mPW1LYP yielding the best results for first-row, and mPW1PW91 for second-row atoms. Indications exist that a hybrid of the type $a$ mPW1LYP + $(1-a)$ mPW1PW91 yields better results than either of the constituent functionals.Comment: Phys. Rev. A, in press (revised version, review of issues concerning DFT and electron affinities added

The open XXZ and associated models at q root of unity

The generalized open XXZ model at $q$ root of unity is considered. We review how associated models, such as the $q$ harmonic oscillator, and the lattice sine-Gordon and Liouville models are obtained. Explicit expressions of the local Hamiltonian of the spin ${1 \over 2}$ XXZ spin chain coupled to dynamical degrees of freedom at the one end of the chain are provided. Furthermore, the boundary non-local charges are given for the lattice sine Gordon model and the $q$ harmonic oscillator with open boundaries. We then identify the spectrum and the corresponding Bethe states, of the XXZ and the q harmonic oscillator in the cyclic representation with special non diagonal boundary conditions. Moreover, the spectrum and Bethe states of the lattice versions of the sine-Gordon and Liouville models with open diagonal boundaries is examined. The role of the conserved quantities (boundary non-local charges) in the derivation of the spectrum is also discussed.Comment: 31 pages, LATEX, minor typos correcte