Epigenetic Regulation of a Murine Retrotransposon by a Dual Histone Modification Mark

Large fractions of eukaryotic genomes contain repetitive sequences of which the vast majority is derived from transposable elements (TEs). In order to inactivate those potentially harmful elements, host organisms silence TEs via methylation of transposon DNA and packaging into chromatin associated with repressive histone marks. The contribution of individual histone modifications in this process is not completely resolved. Therefore, we aimed to define the role of reversible histone acetylation, a modification commonly associated with transcriptional activity, in transcriptional regulation of murine TEs. We surveyed histone acetylation patterns and expression levels of ten different murine TEs in mouse fibroblasts with altered histone acetylation levels, which was achieved via chemical HDAC inhibition with trichostatin A (TSA), or genetic inactivation of the major deacetylase HDAC1. We found that one LTR retrotransposon family encompassing virus-like 30S elements (VL30) showed significant histone H3 hyperacetylation and strong transcriptional activation in response to TSA treatment. Analysis of VL30 transcripts revealed that increased VL30 transcription is due to enhanced expression of a limited number of genomic elements, with one locus being particularly responsive to HDAC inhibition. Importantly, transcriptional induction of VL30 was entirely dependent on the activation of MAP kinase pathways, resulting in serine 10 phosphorylation at histone H3. Stimulation of MAP kinase cascades together with HDAC inhibition led to simultaneous phosphorylation and acetylation (phosphoacetylation) of histone H3 at the VL30 regulatory region. The presence of the phosphoacetylation mark at VL30 LTRs was linked with full transcriptional activation of the mobile element. Our data indicate that the activity of different TEs is controlled by distinct chromatin modifications. We show that activation of a specific mobile element is linked to a dual epigenetic mark and propose a model whereby phosphoacetylation of histone H3 is crucial for full transcriptional activation of VL30 elements

Causes and control practices of filamentous foaming in wastewater treatment plants

Three large Wastewater Treatment Plants (WWTP) in Greece with occasional severe foaming were selected in order to evaluate the influence of the recycle of foaming filamentous bacteria from the solids handling processes to their foaming problems. According to the results, a range of 3–39% of the total quantity of viable foaming filamentous bacteria present in biological wastewater treatment stage of the WWTPs was found to be recycled through the underflows of thickening and dewatering processes. In parallel, the feasibility of alternative nonspecific foam control methods was assessed. Within the context of this study two foam control practices were evaluated: (a) the addition of polyaluminium chloride (PAX) to the mixed liquor and (b) the selective wasting of foam from the activated sludge system followed by dewatering. The economic feasibility of each method was assessed by evaluating and comparing the total cost (capital cost and operation and maintenance costs) of each alternative for Psyttalia Sewage Treatment Works, which is the largest WWTP in Greece serving the Greater Athens Area with a treatment capacity of approximately 3.5 million people. The estimated total costs of the two foam control methods were 0.009 and 0.002 €/m3 of wastewater for PAX addition and selective wasting of foam, respectively.</jats:p

The effect of reactor configuration and operational mode on Microthrix parvicella bulking and foaming in nutrient removal activated sludge systems

Three bench-scale nutrient removal activated sludge units were used to examine the effect of the reactor configuration and the intermittent aeration mode on the growth of Microthrix parvicella. According to the results, the plug flow configuration seems to achieve satisfactory Microthrix parvicella control. The imposed concentration gradient for both RBCOD and SBCOD creates a selective advantage for the floc forming bacteria throughout the system (both the anoxic and oxic zones) and limits Microthrix parvicella growth. In terms of the operational mode, the intermittent aeration CSTR nutrient removal system promotes the growth of M.parvicella and deteriorates the settling characteristics of the activated sludge.</jats:p

Effect of solids retention time on Microthrix parvicella growth

The objective of this study was to evaluate the effect of solids retention time (SRT) on M. parvicella growth and to calculate growth kinetic parameters of this filamentous species. Bench-scale continuous-flow experiments showed that M. parvicella growth can be significantly suppressed at an SRT of lower than 5.7 d for temperatures of between 14 and 18oC. According to the continuous-flow experiments the maximum sludge age for the avoidance of filamentous foaming problems caused by M. parvicella is 6 d for temperatures lower than 18oC. At this sludge age M. parvicella loses its hydrophobicity and therefore its foaming potential. However, even lower SRTs are required in order to achieve a significant suppression of its growth. At SRT values of less than 5.7 d M. parvicella initially forms a shorter filament (&lt; 150 μm) with clear spaces inside filaments and variable Gram stain reaction and eventually is eliminated from activated sludge biocoenosis. According to kinetic studies presented in this paper, M. parvicella is a slow growing bacterium with a low maximum specific growth rate of 0.67 1/d and 0.53 1/d under aerobic and anoxic conditions respectively. Maintenance energy requirements of M. parvicella were found to be significantly lower than the maintenance energy of floc forming micro-organisms as well as other filamentous species, thus providing the micro-organism with a significant advantage under starvation conditions prevailing at the majority of the extended aeration activated sludge systems

Causes of, and control strategies for, Microthrix parvicella bulking and foaming in nutrient removal activated sludge systems

Bench and pilot scale nutrient removal activated sludge units were used to examine the effect of factors such as temperature, substrate type (easily biodegradable in the form of acetate and slowly biodegradable in the form of oleic acid) on Microthrix parvicella growth. The configurations examined include complete mix with and without selectors (anoxic and anaerobic) and plug flow reactors. The results indicate that low temperatures and substrates in the form of long chain fatty acids favour the growth of M. parvicella. With respect to reactor configuration, a plug flow configuration was shown to be quite effective in controlling the growth of M. parvicella and producing a sludge with good settling characteristics, while the presence of a selector, either anoxic or anaerobic, had no significant effect on the growth of M. parvicella.</jats:p