Identification of a CD4+ T cell-stimulating antigen of pathogenic bacteria by expression cloning.

Identifying the immunogenic proteins that elicit pathogen-specific T cell responses is key to rational vaccine design. While several approaches have succeeded in identifying major histocompatibility complex (MHC) class I bound peptides that stimulate CD8+ T cells, these approaches have been difficult to extend to peptides presented by MHC class II molecules that stimulate CD4+ T cells. We describe here a novel strategy for identifying CD4+ T cell-stimulating antigen genes. Using Listeria monocytogenes-specific, lacZ-inducible T cells as single-cell probes, we screened a Listeria monocytogenes genomic library as recombinant Escherichia coli that were fed to macrophages. The antigen gene was isolated from the E. coli clone that, when ingested by the macrophages, allowed generation of the appropriate peptide/MHC class II complex and T cell activation. We show that the antigenic peptide is derived from a previously unknown listeria gene product with characteristics of a membrane-bound protein

Intermittent many-body dynamics at equilibrium

The equilibrium value of an observable defines a manifold in the phase space of an ergodic and equipartitioned many-body system. A typical trajectory pierces that manifold infinitely often as time goes to infinity. We use these piercings to measure both the relaxation time of the lowest frequency eigenmode of the Fermi-Pasta-Ulam chain, as well as the fluctuations of the subsequent dynamics in equilibrium. The dynamics in equilibrium is characterized by a power-law distribution of excursion times far off equilibrium, with diverging variance. Long excursions arise from sticky dynamics close to q-breathers localized in normal mode space. Measuring the exponent allows one to predict the transition into nonergodic dynamics. We generalize our method to Klein-Gordon lattices where the sticky dynamics is due to discrete breathers localized in real space.We thank P. Jeszinszki and I. Vakulchyk for helpful discussions on computational aspects. The authors acknowledge financial support from IBS (Project Code No. IBS-R024-D1). (IBS-R024-D1 - IBS)Published versio

A fluid flow perspective on the diagenesis of Te Aute limestones

Pliocene cool-water, bioclastic Te Aute limestones in East Coast Basin, New Zealand, accumulated either in shelfal shoal areas or about structurally shallow growth fold structures in the tectonically active accretionary forearc prism. Up to five stages of carbonate cementation are recognised, based on cement sequence-stratigraphic concepts, that formed on the seafloor during exposure of the limestones before burial, during burial, uplift, and deformation. Two principal fluid types are identified--topography-driven meteoric fluids and compaction-driven fluids. We have developed conceptual and quantitative models that attempt to relate the physical characteristics of fluid flow to the cement paragenesis. In particular, we have simulated the effects of uplift of the axial ranges bordering East Coast Basin in terms of the degree of penetration of a meteoric wedge into the basin. The dynamics of meteoric flow changed dramatically during uplift over the last 2 m.y. such that the modelled extent of the meteoric wedge is at least 40 km across the basin, and the penetration depth 1500 m or more corresponding with measured freshwater intersections in some oil wells. Cement-fluid relationships include: (1) true marine cements that precipitated in areas remote from shallow freshwater lenses; (2) pre-compaction cements that formed in shallow freshwater lenses beneath limestone "islands"; (3) post-compaction cements derived from compaction-driven flow during burial; (4) early uplift-related fracture-fill cements formed during deformation of the accretionary prism and uplift of the axial ranges; and (5) late uplift-related cements associated with uplift into a shallow meteoric regime

High-resolution Earth-based lunar radar studies: Applications to lunar resource assessment

The lunar regolith will most likely be a primary raw material for lunar base construction and resource extraction. High-resolution radar observations of the Moon provide maps of radar backscatter that have intensity variations generally controlled by the local slope, material, and structural properties of the regolith. The properties that can be measured by the radar system include the dielectric constant, density, loss tangent, and wavelength scale roughness. The radar systems currently in operation at several astronomical observatories provide the ability to image the lunar surface at spatial resolutions approaching 30 m at 3.8 cm and 12.6 cm wavelengths and approximately 500 m at 70 cm wavelength. The radar signal penetrates the lunar regolith to a depth of 10-20 wavelengths so the measured backscatter contains contributions from the vacuum-regolith interface and from wavelength-scale heterogeneities in the electrical properties of the subsurface material. The three wavelengths, which are sensitive to different scale structures and scattering volumes, provide complementary information on the regolith properties. Aims of the previous and future observations include (1) analysis of the scattering properties associated with fresh impact craters, impact crater rays, and mantled deposits; (2) analysis of high-incidence-angle observations of the lunar mare to investigate measurement of the regolith dielectric constant and hence porosity; (3) investigation of interferometric techniques using two time-delayed observations of the same site, observations that require a difference in viewing geometry less than 0.05 deg and, hence, fortuitous alignment of the Earth-Moon system when visible from Arecibo Observatory

Sudden Expansion of a One-Dimensional Bose Gas from Power-Law Traps

We analyze free expansion of a trapped one-dimensional Bose gas after a sudden release from the confining trap potential. By using the stationary phase and local density approximations, we show that the long-time asymptotic density profile and the momentum distribution of the gas are determined by the initial distribution of Bethe rapidities (quasimomenta) and hence can be obtained from the solutions to the Lieb-Liniger equations in the thermodynamic limit. For expansion from a harmonic trap, and in the limits of very weak and very strong interactions, we recover the self-similar scaling solutions known from the hydrodynamic approach. For all other power-law traps and arbitrary interaction strengths, the expansion is not self-similar and shows strong dependence of the density profile evolution on the trap anharmonicity. We also characterize dynamical fermionization of the expanding cloud in terms of correlation functions describing phase and density fluctuations.Comment: Final published version with modified title and a couple of other minor changes. 5 pages, 2 figures, and Supplemental Materia

Cementation scenarios for New Zealand Cenozoic nontropical limestones

Cenozoic limestones are widely distributed in New Zealand, especially in the Oligocene-earliest Miocene in both islands, and the Pliocene-Pleistocene in North Island. A spectrum of limestone types exists, but all are skeletal-dominated (>70%), with usually <20% interparticle cement-matrix and <10% siliciclasts, and they have facies attributes typical of nontropical carbonates. The range of diagenetic features identified within the limestones is the basis for assigning them to a small number of “end-member” cementation classes that are inferred to be associated with four, broad, diagenetic settings

Kinetic limitations of cooperativity based drug delivery systems

We study theoretically a novel drug delivery system that utilizes the overexpression of certain proteins in cancerous cells for cell specific chemotherapy. The system consists of dendrimers conjugated with "keys" (ex: folic acid) which "key-lock" bind to particular cell membrane proteins (ex: folate receptor). The increased concentration of "locks" on the surface leads to a longer residence time for the dendrimer and greater incorporation into the cell. Cooperative binding of the nanocomplexes leads to an enhancement of cell specificity. However, both our theory and detailed analysis of in-vitro experiments indicate that the degree of cooperativity is kinetically limited. We demonstrate that cooperativity and hence the specificity to particular cell type can be increased by making the strength of individual bonds weaker, and suggest a particular implementation of this idea. The implications of the work for optimizing the design of drug delivery vehicles are discussed.Comment: 4 pages, 4 figures, v3: minor revision

Sexual negotiation in the AIDS era: negotiated safety revisited

Objective: To test the safety of the 'negotiated safety' strategy - the strategy of dispensing with condoms within HIV-seronegative concordant regular sexual relationships under certain conditions. Method: Data from a recently recruited cohort of homosexually active men (Sydney Men and Sexual Health cohort, n = 1037) are used to revisit negotiated safety. The men were surveyed using a structured questionnaire and questions addressing their sexual relationships and practice, their own and their regular partner's serostatus, agreements entered into by the men concerning sexual practice within and outside their regular relationship, and contextual and demographic variables. Results: The findings indicate that a significant number of men used negotiated safety as an HIV prevention strategy. In the 6 months prior to interview, of the 181 men in seroconcordant HIV-negative regular relationships, 62% had engaged in unprotected anal intercourse within their relationship, and 91% (165 men) had not engaged in unprotected anal intercourse outside their relationship. Of these 165 men, 82% had negotiated agreements about sex outside their relationship. The safety of negotiation was dependent not only on seroconcordance but also on the presence of an agreement; 82% of the men who had not engaged in unprotected anal intercourse outside their regular relationship had entered into an agreement with their partner, whereas only 56% of those who had engaged in unprotected anal intercourse had an agreement. The safety of negotiation was also related to the nature of the safety agreement reached between the men and on the acceptability of condoms. Agreements between HIV-negative seroconcordant regular partners prohibiting anal intercourse with casual partners or any form of sex with a casual partner were typically complied with, and men who had such negotiated agreements were at low risk of HIV infection. Conclusions: The adoption of the strategy of negotiated safety among men in HIV-seronegative regular relationships may help such men sustain the safety of their sexual practice

Microwave scattering and emission properties of large impact craters on the surface of Venus

Many of the impact craters on Venus imaged by the Magellan synthetic aperture radar (SAR) have interior floors with oblique incidence angle backscatter cross sections 2 to 16 times (3 dB to 12 dB) greater than the average scattering properties of the planet's surface. Such high backscatter cross sections are indicative of a high degree of wavelength-scale surface roughness and/or a high intrinsic reflectivity of the material forming the crater floors. Fifty-three of these (radar) bright floored craters are associated with 93 percent of the parabolic-shaped radar-dark features found in the Magellan SAR and emissivity data, features that are thought to be among the youngest on the surface of Venus. It was suggested by Campbell et al. that either the bright floors of the parabolic feature parent craters are indicative of a young impact and the floor properties are modified with time to a lower backscatter cross section or that they result from some property of the surface or subsurface material at the point of impact or from the properties of the impacting object. As a continuation of earlier work we have examined all craters with diameters greater than 30 km (except 6 that were outside the available data) so both the backscatter cross section and emissivity of the crater floors could be estimated from the Magellan data