Assessing associations between the AURKAHMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers

While interplay between BRCA1 and AURKA-RHAMM-TPX2-TUBG1 regulates mammary epithelial polarization, common genetic variation in HMMR (gene product RHAMM) may be associated with risk of breast cancer in BRCA1 mutation carriers. Following on these observations, we further assessed the link between the AURKA-HMMR-TPX2-TUBG1 functional module and risk of breast cancer in BRCA1 or BRCA2 mutation carriers. Forty-one single nucleotide polymorphisms (SNPs) were genotyped in 15,252 BRCA1 and 8,211 BRCA2 mutation carriers and subsequently analyzed using a retrospective likelihood appr

Functional mechanisms underlying pleiotropic risk alleles at the 19p13.1 breast-ovarian cancer susceptibility locus

A locus at 19p13 is associated with breast cancer (BC) and ovarian cancer (OC) risk. Here we analyse 438 SNPs in this region in 46,451 BC and 15,438 OC cases, 15,252 BRCA1 mutation carriers and 73,444 controls and identify 13 candidate causal SNPs associated with serous OC (P=9.2 × 10-20), ER-negative BC (P=1.1 × 10-13), BRCA1-associated BC (P=7.7 × 10-16) and triple negative BC (P-diff=2 × 10-5). Genotype-gene expression associations are identified for candidate target genes ANKLE1 (P=2 × 10-3) and ABHD8 (P<2 × 10-3). Chromosome conformation capture identifies interactions between four candidate SNPs and ABHD8, and luciferase assays indicate six risk alleles increased transactivation of the ADHD8 promoter. Targeted deletion of a region containing risk SNP rs56069439 in a putative enhancer induces ANKLE1 downregulation; and mRNA stability assays indicate functional effects for an ANKLE1 3′-UTR SNP. Altogether, these data suggest that multiple SNPs at 19p13 regulate ABHD8 and perhaps ANKLE1 expression, and indicate common mechanisms underlying breast and ovarian cancer risk

subgroup analysis of rucaparib in platinum sensitive recurrent ovarian carcinoma effect of prior chemotherapy regimens in ariel3

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Variabilidade genética para caracteres morfométricos de matrizes de castanha-do-brasil da Amazônia Mato-grossense

O presente estudo objetivou estudar a variabilidade genética de matrizes de Bertholletia excelsa através da estimação de parâmetros e ganhos genéticos para os caracteres peso/ouriço (g), peso de sementes/ouriço (g) e número de sementes/ouriço no pré-melhoramento da espécie. Foram utilizadas 90 matrizes de polinização aberta, sendo 30 matrizes de cada tipo, denominadas localmente de rajada, mirim e rosa, no município de Cotriguaçu, noroeste de Mato Grosso, região amazônica. O experimento foi estabelecido sob delineamento inteiramente ao acaso, com 90 tratamentos (matrizes) e seis ouriços por matriz, com suas respectivas sementes. As variáveis foram analisadas usando-se a metodologia de modelo linear misto do software SELEGEN-REML/BLUP. Os coeficientes de herdabilidades individuais no sentido amplo dos efeitos genotípicos totais (0,21, 0,14 e 0,34) para os caracteres peso/ouriço (g), peso de sementes/ouriço (g) e número de sementes/ouriço, respectivamente, são considerados moderados para os dois primeiros caracteres e alto para o caráter número de sementes/ouriço, sugerindo expressivo controle genético. A seleção das 10 melhores matrizes revelou predominância da procedência do tipo rosa, proporcionando ganhos genéticos expressivos de pelo menos 24,16% para peso/ouriço (g), 27,44% para peso de sementes/ouriço e 16,92% para o caráter número de sementes por ouriço. Os valores expressivos das matrizes do tipo rosa estimulam a utilização desses germoplasmas em programas de melhoramento genético da espécie, na seqüência das avaliações, bem como apontando para a possibilidade de obtenção de híbridos intraespecíficos para caracteres desejáveis.The goal of the study was to detect genetic variability in Brazilian nuts parent trees through parameters estimation and genetic gains for the following indexes: fruit weight (g) seed weight per fruit (g) and number of seeds per fruit at species pre-improvement. Ninety (90) open pollination parent trees were used, 30 of which being of each type, locally called "rajada", "mirim" and "rosa" at the Cotriguacu municipality, Northeastern of Mato Grosso State. A completely randomized design was used, with 90 treatments (parent trees) and six fruits per parcel with their respective seeds. Variables were analyzed using the method of mixed univariate additive linear model from the software SELEGEN-REML/BLUP. Individual heritability coefficients in the broad sense for total genotypic effects (0,21, 0,14 e 0,34) for fruit weight (g) seed weight per fruit (g) and number of seeds per fruit (g) respectively, are considered moderate for the two first indexes and high for number of seeds per fruit, suggesting substantial genetic control. Selection of the 10 best provenances and parent trees showed predominance of the "rosa" type, allowing substantial genetic gains of at least 24,16% for fruit weight (g), 27,44% for seed weight per fruit and 16,92% for the number of seeds per fruit. The remarkable values for the "rosa" type suggest utilization of such germoplasms in genetic improvement programs of this species in the following evaluations. The results also point out the possibility of obtaining intraspecific hybrids for desirable characteristics

Factors Associated with Revision Surgery after Internal Fixation of Hip Fractures

Background: Femoral neck fractures are associated with high rates of revision surgery after management with internal fixation. Using data from the Fixation using Alternative Implants for the Treatment of Hip fractures (FAITH) trial evaluating methods of internal fixation in patients with femoral neck fractures, we investigated associations between baseline and surgical factors and the need for revision surgery to promote healing, relieve pain, treat infection or improve function over 24 months postsurgery. Additionally, we investigated factors associated with (1) hardware removal and (2) implant exchange from cancellous screws (CS) or sliding hip screw (SHS) to total hip arthroplasty, hemiarthroplasty, or another internal fixation device. Methods: We identified 15 potential factors a priori that may be associated with revision surgery, 7 with hardware removal, and 14 with implant exchange. We used multivariable Cox proportional hazards analyses in our investigation. Results: Factors associated with increased risk of revision surgery included: female sex, [hazard ratio (HR) 1.79, 95% confidence interval (CI) 1.25-2.50; P = 0.001], higher body mass index (fo

Locomotor repertoire of the larval zebrafish: swimming, turning and prey capture

Larval zebrafish (Brachydanio rerio) are a popular model system because of their genetic attributes, transparency and relative simplicity. They have approximately 200 neurons that project from the brainstem into the spinal cord. Many of these neurons can be individually identified and laser-ablated in intact larvae. This should facilitate cellular-level characterization of the descending control of larval behavior patterns. Towards this end, we attempt to describe the range of locomotor behavior patterns exhibited by zebrafish larvae. Using high-speed digital imaging, a variety of swimming and turning behaviors were analyzed in 6- to 9-day-old larval fish. Swimming episodes appeared to fall into two categories, with the point of maximal bending of the larva's body occurring either near the mid-body (burst swims) or closer to the tail (slow swims). Burst swims also involved larger-amplitude bending, faster speeds and greater yaw than slow swims. Turning behaviors clearly fell into two distinct categories: fast, large-angle escape turns characteristic of escape responses, and much slower routine turns lacking the large counterbend that often accompanies escape turns. Prey-capture behaviors were also recorded. They were made up of simpler locomotor components that appeared to be similar to routine turns and slow swims. The different behaviors observed were analyzed with regard to possible underlying neural control systems. Our analysis suggests the existence of discrete sets of controlling neurons and helps to explain the need for the roughly 200 spinal-projecting nerve cells in the brainstem of the larval zebrafish.</jats:p