A Preliminary Proposal for a Systematic GABC Encoding of Gregorian Chant

UIDB/00693/2020 UIDP/00693/2020In the last years, several approaches have addressed the encoding of the different music scripts used for plainchant. One of these approaches is the GABC format. While being a comprehensive symbolic representation of square notation, the lack of a formal specification for GABC usually leads to ambiguities, which must be avoided in the specification of any encoding format. Sometimes, the simple trial-and-error approach of entering the GABC code into an engraving system - such as Illuminare, Scrib.io, or GABC Transcription Tool - can solve this ambiguity. However, these engraving systems have shown some inconsistency among themselves when rendering GABC, sometimes displaying different music for the same code snippet. This paper presents a systematic approach to encoding Gregorian chant originally written in Aquitanian neumes and square notation to eliminate ambiguities inherent in the GABC specification. By formalizing the grammar of GABC, we address the challenges of inaccurate renderings in current music notation software. Our methodology includes developing a "Systematic GABC"(S-GABC) following a critical and scientific mentality to ensure the endurance of the notation. This paper demonstrates our system's effectiveness in standardizing Gregorian chant encoding, offering significant contributions to digital musicology and enhancing the accuracy of musical heritage digitization.publishersversionpublishe

Retrieving Music Semantics from Optical Music Recognition by Machine Translation

In this paper, we apply machine translation techniques to solve one of the central problems in the field of optical music recognition: extracting the semantics of a sequence of music characters. So far, this problem has been approached through heuristics and grammars, which are not generalizable solutions. We borrowed the seq2seq model and the attention mechanism from machine translation to address this issue. Given its example-based learning, the model proposed is meant to apply to different notations provided there is enough training data. The model was tested on the PrIMuS dataset of common Western music notation incipits. Its performance was satisfactory for the vast majority of examples, flawlessly extracting the musical meaning of 85% of the incipits in the test set—mapping correctly series of accidentals into key signatures, pairs of digits into time signatures, combinations of digits and rests into multi-measure rests, detecting implicit accidentals, etc.This work is supported by the Spanish Ministry HISPAMUS project TIN2017-86576-R, partially funded by the EU, and by CIRMMT’s Inter-Centre Research Exchange Funding and McGill’s Graduate Mobility Award

Evaluation of a newly developed flipped-classroom course on interprofessional practice in health care for medical students

Interprofessional education is expected to promote collaborative practice and should therefore be included in health professionals’ curricula. Reports on interprofessional curricular development and its evaluation are rare. We therefore undertook a comprehensive quantitative and qualitative evaluation of a new, mandatory course on interprofessional collaboration for medical students during their third year of the Bachelor of Medicine study programme. The newly developed and implemented course spans over six weeks and was designed in a hybrid, flipped-classroom format. It incorporates experience- and case-based learning as well as interactions with other health professionals. Each student completes an eLearning and a clinical workshadowing individually before attending the – due to the pandemic – virtual live lectures. To assess quality and usefulness of teaching-learning formats and course structure to learn about interprofessional collaboration and to develop interprofessional competencies and identity, a quantitative and qualitative evaluation was performed with more than 280 medical students and 26 nurse educators from teaching hospitals using online surveys (open & closed-ended format). Data were analyzed descriptively and using content analysis processes. Students appreciated the flipped-classroom concept, the real-world case-based learning scenarios with interprofessional lecturer teams, and the possibility of an experience-based learning opportunity in the clinical setting including interaction with students and professionals from other health professions. Interprofessional identity did not change during the course. Evaluation data showed that the course is a promising approach for teaching-learning interprofessional competencies to medical students. The evaluation revealed three factors that determined the success of this course, namely, a flipped-classroom concept, the individual workshadowing of medical students with another health professional, mainly nurses, and live sessions with interprofessional teaching-learning teams. The course structure and teaching-learning methods showed potential and could serve as a template for interprofessional course development in other institutions and on other course topics

Encoding Polyphony from Medieval Manuscripts Notated in Mensural Notation

This panel submission for the 2021 Music Encoding Conference brings together five short papers that focus on the making of computer-readable encodings of polyphony in the notational style – mensural notation – in which it was originally copied. Mensural notation was used in the medieval West to encode polyphony from the late thirteenth to sixteenth centuries. The Measuring Polyphony (MP) Online Editor, funded by an NEH Digital Humanities Advancement Grant, is a software that enables non-technical users to make Humdrum and MEI encodings of mensural notation, and links these encodings to digital images of the manuscripts in which these compositions were first notated. Topics explored by the authors include: the processes of, and the goals informing, the linking of manuscript images to music encodings; choices and compromises made in the development process of the MP Editor in order to facilitate its rapid deployment; and the implications of capturing dual encodings – a parts-based encoding that reflects the layout of the original source, and a score-based encoding. Having two encodings of the music data is useful for a variety of activities, including performance and analysis, but also within the editorial process, and for sharing data with other applications. The authors present two case studies that document the possibilities and potential in the interchange of music data between the MP Editor and other applications, specifically, MuRET, an optical music recognition (OMR) tool, and Humdrum analysis tools

Noninvasive Relative Quantification of [11C]ABP688 PET Imaging in Mice Versus an Input Function Measured Over an Arteriovenous Shunt

Impairment of the metabotropic glutamate receptor 5 (mGluR5) has been implicated with various neurologic disorders. Although mGluR5 density can be quantified with the PET radiotracer [11C]ABP688, the methods for reproducible quantification of [11C]ABP688 PET imaging in mice have not been thoroughly investigated yet. Thus, this study aimed to assess and validate cerebellum as reference region for simplified reference tissue model (SRTM), investigate the feasibility of a noninvasive cardiac image-derived input function (IDIF) for relative quantification, to validate the use of a PET template instead of an MRI template for spatial normalization, and to determine the reproducibility and within-subject variability of [11C]ABP688 PET imaging in mice. Blocking with the mGluR5 antagonist MPEP resulted in a reduction of [11C]ABP688 binding of 41% in striatum (p < 0.0001), while no significant effect could be found in cerebellum (−4.8%, p > 0.99) indicating cerebellum as suitable reference region for mice. DVR-1 calculated using a noninvasive IDIF and an arteriovenous input function correlated significantly when considering the cerebellum as the reference region (striatum: DVR-1, r = 0.978, p < 0.0001). Additionally, strong correlations between binding potential calculated from SRTM (BPND) with DVR-1 based on IDIF (striatum: r = 0.980, p < 0.0001) and AV shunt (striatum: r = 0.987, p < 0.0001). BPND displayed higher discrimination power than VT values in determining differences between wild-types and heterozygous Q175 mice, an animal model of Huntington's disease. Furthermore, we showed high agreement between PET- and MRI-based spatial normalization approaches (striatum: r = 0.989, p < 0.0001). Finally, both spatial normalization approaches did not reveal any significant bias between test-retest scans, with a relative difference below 5%. This study indicates that noninvasive quantification of [11C]ABP688 PET imaging is reproducible and cerebellum can be used as reference region in mice

Retrieving Music Semantics from Optical Music Recognition by Machine Translation

In this paper, we apply machine translation techniques to solve one of the central problems in the field of optical music recognition: extracting the semantics of a sequence of music characters. So far, this problem has been approached through heuristics and grammars, which are not generalizable solutions. We borrowed the seq2seq model and the attention mechanism from machine translation to address this issue. Given its example-based learning, the model proposed is meant to apply to different notations provided there is enough training data. The model was tested on the PrIMuS dataset of common Western music notation incipits. Its performance was satisfactory for the vast majority of examples, flawlessly extracting the musical meaning of 85% of the incipits in the test set—mapping correctly series of accidentals into key signatures, pairs of digits into time signatures, combinations of digits and rests into multi-measure rests, detecting implicit accidentals, etc

Clinical Characteristics of Inpatients with Childhood vs. Adolescent Anorexia Nervosa

We aimed to compare the clinical data at first presentation to inpatient treatment of children (<14 years) vs. adolescents (≥14 years) with anorexia nervosa (AN), focusing on duration of illness before hospital admission and body mass index (BMI) at admission and discharge, proven predictors of the outcomes of adolescent AN. Clinical data at first admission and at discharge in 289 inpatients with AN (children: n = 72; adolescents: n = 217) from a German multicenter, web-based registry for consecutively enrolled patients with childhood and adolescent AN were analyzed. Inclusion criteria were a maximum age of 18 years, first inpatient treatment due to AN, and a BMI <10th BMI percentile at admission. Compared to adolescents, children with AN had a shorter duration of illness before admission (median: 6.0 months vs. 8.0 months, p = 0.004) and higher BMI percentiles at admission (median: 0.7 vs. 0.2, p = 0.004) as well as at discharge (median: 19.3 vs. 15.1, p = 0.011). Thus, in our study, children with AN exhibited clinical characteristics that have been associated with better outcomes, including higher admission and discharge BMI percentile. Future studies should examine whether these factors are actually associated with positive long-term outcomes in children

Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION

As countries with endemic canine rabies progress towards elimination by 2030, it will become necessary to employ techniques to help plan, monitor, and confirm canine rabies elimination. Sequencing can provide critical information to inform control and vaccination strategies by identifying genetically distinct virus variants that may have different host reservoir species or geographic distributions. However, many rabies testing laboratories lack the resources or expertise for sequencing, especially in remote or rural areas where human rabies deaths are highest. We developed a low-cost, high throughput rabies virus sequencing method using the Oxford Nanopore MinION portable sequencer. A total of 259 sequences were generated from diverse rabies virus isolates in public health laboratories lacking rabies virus sequencing capacity in Guatemala, India, Kenya, and Vietnam. Phylogenetic analysis provided valuable insight into rabies virus diversity and distribution in these countries and identified a new rabies virus lineage in Kenya, the first published canine rabies virus sequence from Guatemala, evidence of rabies spread across an international border in Vietnam, and importation of a rabid dog into a state working to become rabies-free in India. Taken together, our evaluation highlights the MinION’s potential for low-cost, high volume sequencing of pathogens in locations with limited resources

Many Labs 5:Testing pre-data collection peer review as an intervention to increase replicability

Replication studies in psychological science sometimes fail to reproduce prior findings. If these studies use methods that are unfaithful to the original study or ineffective in eliciting the phenomenon of interest, then a failure to replicate may be a failure of the protocol rather than a challenge to the original finding. Formal pre-data-collection peer review by experts may address shortcomings and increase replicability rates. We selected 10 replication studies from the Reproducibility Project: Psychology (RP:P; Open Science Collaboration, 2015) for which the original authors had expressed concerns about the replication designs before data collection; only one of these studies had yielded a statistically significant effect (p < .05). Commenters suggested that lack of adherence to expert review and low-powered tests were the reasons that most of these RP:P studies failed to replicate the original effects. We revised the replication protocols and received formal peer review prior to conducting new replication studies. We administered the RP:P and revised protocols in multiple laboratories (median number of laboratories per original study = 6.5, range = 3?9; median total sample = 1,279.5, range = 276?3,512) for high-powered tests of each original finding with both protocols. Overall, following the preregistered analysis plan, we found that the revised protocols produced effect sizes similar to those of the RP:P protocols (?r = .002 or .014, depending on analytic approach). The median effect size for the revised protocols (r = .05) was similar to that of the RP:P protocols (r = .04) and the original RP:P replications (r = .11), and smaller than that of the original studies (r = .37). Analysis of the cumulative evidence across the original studies and the corresponding three replication attempts provided very precise estimates of the 10 tested effects and indicated that their effect sizes (median r = .07, range = .00?.15) were 78% smaller, on average, than the original effect sizes (median r = .37, range = .19?.50)

Many Labs 2: Investigating Variation in Replicability Across Samples and Settings

We conducted preregistered replications of 28 classic and contemporary published findings, with protocols that were peer reviewed in advance, to examine variation in effect magnitudes across samples and settings. Each protocol was administered to approximately half of 125 samples that comprised 15,305 participants from 36 countries and territories. Using the conventional criterion of statistical significance (p < .05), we found that 15 (54%) of the replications provided evidence of a statistically significant effect in the same direction as the original finding. With a strict significance criterion (p < .0001), 14 (50%) of the replications still provided such evidence, a reflection of the extremely highpowered design. Seven (25%) of the replications yielded effect sizes larger than the original ones, and 21 (75%) yielded effect sizes smaller than the original ones. The median comparable Cohen’s ds were 0.60 for the original findings and 0.15 for the replications. The effect sizes were small (< 0.20) in 16 of the replications (57%), and 9 effects (32%) were in the direction opposite the direction of the original effect. Across settings, the Q statistic indicated significant heterogeneity in 11 (39%) of the replication effects, and most of those were among the findings with the largest overall effect sizes; only 1 effect that was near zero in the aggregate showed significant heterogeneity according to this measure. Only 1 effect had a tau value greater than .20, an indication of moderate heterogeneity. Eight others had tau values near or slightly above .10, an indication of slight heterogeneity. Moderation tests indicated that very little heterogeneity was attributable to the order in which the tasks were performed or whether the tasks were administered in lab versus online. Exploratory comparisons revealed little heterogeneity between Western, educated, industrialized, rich, and democratic (WEIRD) cultures and less WEIRD cultures (i.e., cultures with relatively high and low WEIRDness scores, respectively). Cumulatively, variability in the observed effect sizes was attributable more to the effect being studied than to the sample or setting in which it was studied.UCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Sociales::Instituto de Investigaciones Psicológicas (IIP