Deep-seated gravitational slope deformations in central Sardinia: insights into the geomorphological evolution

In this study, we analyse deep-seated gravitational slope deformations (DSGSDs) in central Sardinia. The area is characterised by plateaus with a prominent limestone scarp overlying metamorphites. A comprehensive mapping of structural, karst, fluvial, and slope morphologies in Pardu and Ulassai valleys is presented herein. The uplift linked to the Plio-Pleistocene tectonic activity leads to high-slope topography, which favours gravitational processes, such as DSGSDs and rock-avalanches. Although DSGSD is a common phenomenon in the relief of the central Mediterranean region, it has never been studied in Sardinia. We describe the kinematic models and geomorphological evolution of DSGSD in Sardinia for the first time. The application of light detection and ranging, high-resolution unmanned aerial vehicle photogrammetry, and geological, structural, and geomorphological surveys enabled a depth morphometric analysis and the development of interpretative three-dimensional models. The geo-structural setting and high relief energy associated with recent upliftment are the major controlling factors of DSGSDs

Terpenoid Transport in Plants: How Far from the Final Picture?

Contrary to the biosynthetic pathways of many terpenoids, which are well characterized and elucidated, their transport inside subcellular compartments and the secretion of reaction intermediates and final products at the short- (cell-to-cell), medium- (tissue-to-tissue), and long-distance (organ-to-organ) levels are still poorly understood, with some limited exceptions. In this review, we aim to describe the state of the art of the transport of several terpene classes that have important physiological and ecological roles or that represent high-value bioactive molecules. Among the tens of thousands of terpenoids identified in the plant kingdom, only less than 20 have been characterized from the point of view of their transport and localization. Most terpenoids are secreted in the apoplast or stored in the vacuoles by the action of ATP-binding cassette (ABC) transporters. However, little information is available regarding the movement of terpenoid biosynthetic intermediates from plastids and the endoplasmic reticulum to the cytosol. Through a description of the transport mechanisms of cytosol- or plastid-synthesized terpenes, we attempt to provide some hypotheses, suggestions, and general schemes about the trafficking of different substrates, intermediates, and final products, which might help develop novel strategies and approaches to allow for the future identification of terpenoid transporters that are still uncharacterized

Evolution of deep-seated gravitational slope deformations in relation with uplift and fluvial capture processes in Central Eastern Sardinia (Italy)

Connections between Plio-Pleistocenic tectonic activity and geomorphological evolution were studied in the Pardu Valley and Quirra Valley (Ogliastra, East Sardinia). The intensive Quaternary tectonic activity in Sardinia linked to the opening of the Tyrrhenian Basin is known. In Eastern Sardinia, it manifests with an uplift that is recorded by geomorphological indicators, such as deep-seated gravitational slope deformation, fluvial captures, engraved valleys, waterfalls, and heterogeneous water drainage. The Pardu River flows from the NW toward the SE and then abruptly changes direction toward the NE. At this point, a capture elbow adjacent to the current head of the Quirra River is well developed. The Quirra River, in its upstream part, flows at altitudes approximately 200 m higher than the Pardu River. It also shows an oversized and over-flooded valley with respect to the catchment area upstream. This setting indicates that the Pardu River, which previously flowed south along the Quirra River, was captured by the Pelau River. We analyzed long-term landslides with lateral spreading and sackung characteristics, which involve giant carbonate blocks and underlying foliated metamorphites in both valleys. The use of LiDAR, high-resolution uncrewed aerial vehicle digital photogrammetry (UAV-DP), and geological, structural, and geomorphological surveys enabled a depth morphometric analysis and the creation of interpretative 3D models of DGSDs. Space-borne interferometric synthetic aperture radar (InSAR) data using ERS and Sentinel-1 satellites identified downslope movement of up to 20 mm per year in both Pardu Valley flanks. Multi-source and multi-scale data showed that the state of activity of the DGSDs is closely linked to the geomorphological evolution of the catchment areas of the Rio Pardu and Rio Quirra. The intense post-capture erosion acted in the Rio Pardu Valley, giving it morphometric characteristics that were favorable to the current evolution of the DGSDs, while the Rio Quirra Valley presents paleo-DGSDs that have been fossilized by pre-capture terraced alluvial deposits

Angiogenesis genotyping and clinical outcome during regorafenib treatment in metastatic colorectal cancer patients

Regorafenib monotherapy is a potential option for metastatic colorectal cancer patients. However, the lack of predictive factors and the severe toxicities related to treatment have made its use in clinical practice challenging. Polymorphisms of VEGF and its receptor (VEGFR) genes might regulate angiogenesis and thus potentially influence outcome during anti-angiogenesis treatment such as regorafenib. Aim of our study was to evaluate the role of VEGF and VEGFR genotyping in determining clinical outcome for colorectal cancer patients receiving regorafenib. We retrospectively collected clinical data and samples (tumour or blood) of 138 metastatic colorectal cancer patients treated with regorafenib. We analysed the correlation of different VEGF-A, VEGF-C and VEGFR-1,2,3 single nucleotide polymorphisms (SNPs) with patients' progression-free survival (PFS) and overall survival (OS). Results from angiogenesis genotyping showed that only VEGF-A rs2010963 maintained an independent correlation with PFS and OS. Among clinical factors only ECOG PS was independently correlated with OS, whereas no correlation with PFS was evident. Grouping together those results allowed further patients stratification into 3 prognostic groups: favourable, intermediate and unfavourable. VEGF-A rs2010963 genotyping may represent an important tool for a more accurate selection of optimal candidates for regorafenib therap

Deep learning for MYC binding site recognition

Motivation: The definition of the genome distribution of the Myc transcription factor is extremely important since it may help predict its transcriptional activity particularly in the context of cancer. Myc is among the most powerful oncogenes involved in the occurrence and development of more than 80% of different types of pediatric and adult cancers. Myc regulates thousands of genes which can be in part different, depending on the type of tissues and tumours. Myc distribution along the genome has been determined experimentally through chromatin immunoprecipitation This approach, although powerful, is very time consuming and cannot be routinely applied to tumours of individual patients. Thus, it becomes of paramount importance to develop in silico tools that can effectively and rapidly predict its distribution on a given cell genome. New advanced computational tools (DeeperBind) can then be successfully employed to determine the function of Myc in a specific tumour, and may help to devise new directions and approaches to experiments first and personalized and more effective therapeutic treatments for a single patient later on.Results: The use of DeeperBind with DeepRAM on Colab platform (Google) can effectively predict the binding sites for the MYC factor with an accuracy above 0.96 AUC, when trained with multiple cell lines. The analysis of the filters in DeeperBind trained models shows, besides the consensus sequence CACGTG classically associated to the MYC factor, also the other consensus sequences G/C box or TGGGA, respectively bound by the SP1 and MIZ-1 transcription factors, which are known to mediate the MYC repressive response. Overall, our findings suggest a stronger synergy between the machine learning tools as DeeperBind and biological experiments, which may reduce the time consuming experiments by providing a direction to guide them

Structural control on the directional amplification of seismic noise (Campo Imperatore, central Italy)

Abstract Seismic signals propagating across a fault may yield information on the internal structure of the fault zone. Here we have assessed the amplification of seismic noise (i.e., ambient vibrations generated by natural or anthropogenic disturbances) across the Vado di Corno Fault (Campo Imperatore, central Italy). The fault zone is considered as an exhumed analogue of the normal faults activated during the L'Aquila 2009 earthquake sequence. Detailed structural geological survey of the footwall block revealed that the fault zone is highly anisotropic and is affected by a complex network of faults and fractures with dominant WNW–ESE strike. We measured seismic noise with portable seismometers along a ∼500 m long transect perpendicular to the average fault strike. Seismic signals were processed calculating the horizontal-to-vertical spectral ratios and performing wavefield polarization analyses. We found a predominant NE–SW to NNE–SSW (i.e., ca. perpendicular to the average strike of the fault-fracture network) amplification of the horizontal component of the seismic waves. Numerical simulations of earthquake-induced ground motions ruled out the role of topography in controlling the polarization and the amplitude of the waves. Therefore, the higher seismic noise amplitude observed in the fault-perpendicular direction was related to the measured fracture network and the resulting stiffness anisotropy of the rock mass. These observations open new perspectives in using measures of ambient seismic noise, which are fast and inexpensive, to estimate the dominant orientation of fracture networks within fault zones

Heterologous expression of Bixa orellana cleavage dioxygenase 4-3 drives crocin but not bixin biosynthesis

Annatto (Bixa orellana) is a perennial shrub native to the Americas, and bixin, derived from its seeds, is a methoxylated apocarotenoid used as a food and cosmetic colorant. Two previous reports claimed to have isolated the carotenoid cleavage dioxygenase (CCD) responsible for the production of the putative precursor of bixin, the C24 apocarotenal bixin dialdehyde. We re-assessed the activity of six Bixa CCDs and found that none of them produced substantial amounts of bixin dialdehyde in Escherichia coli. Unexpectedly, BoCCD4-3 cleaved different carotenoids (lycopene, b-carotene, and zeaxanthin) to yield the C20 apocarotenal crocetin dialdehyde, the known precursor of crocins, which are glycosylated apocarotenoids accumulated in saffron stigmas. BoCCD4-3 lacks a recognizable transit peptide but localized to plastids, the main site of carotenoid accumulation in plant cells. Expression of BoCCD4-3 in Nicotiana benthamiana leaves (transient expression), tobacco (Nicotiana tabacum) leaves (chloroplast transformation, under the control of a synthetic riboswitch), and in conjunction with a saffron crocetin glycosyl transferase, in tomato (Solanum lycopersicum) fruits (nuclear transformation) led to high levels of crocin accumulation, reaching the highest levels (4100 mg/g dry weight) in tomato fruits, which also showed a crocin profile similar to that found in saffron, with highly glycosylated crocins as major compounds. Thus, while the bixin biosynthesis pathway remains unresolved, BoCCD4-3 can be used for the metabolic engineering of crocins in a wide range of different plant tissues

Geohazard features of the Southern Sardinia

The Maps of Geohazard features of Southern Sardinia produced in the framework of the Magic project (MArine Geohazard along Italian Coasts) are here presented. The MaGIC project (Marine Geohazard along the Italian Coasts) had the aim of mapping the geohazard in the Italian seas. The features were derived from the digital elevation model interpretation of the seafloor morphology and shallow sub-surface. From the marine geo-hazards point of view, the main critical elements are represented by gravitational mass processes in the canyon heads, some of which, as in the Toro Canyon, are exposed to seismic triggering. In other cases, we observed that gravitational dynamics connected to fluid leakage processes (pockforms). Large landslides and debris avalanches have been detected in Cagliari Gulf, whereas in eastern upper slope, crescent bedforms, occurring in the eastern sector of the upper slope testify to the upward migration of hyperpycnal erosional structures linked to flows from nearby river inputs

Submarine Geomorphology of the Southwestern Sardinian Continental Shelf (Mediterranean Sea): Insights into the Last Glacial Maximum Sea-Level Changes and Related Environments

During the lowstand sea-level phase of the Last Glacial Maximum (LGM), a large part of the current Mediterranean continental shelf emerged. Erosional and depositional processes shaped the coastal strips, while inland areas were affected by aeolian and fluvial processes. Evidence of both the lowstand phase and the subsequent phases of eustatic sea level rise can be observed on the continental shelf of Sardinia (Italy), including submerged palaeo-shorelines and landforms, and indicators of relict coastal palaeo-environments. This paper shows the results of a high-resolution survey on the continental shelf off San Pietro Island (southwestern Sardinia). Multisensor and multiscale data\u2014obtained by means of seismic sparker, sub-bottom profiler chirp, multibeam, side scan sonar, diving, and uncrewed aerial vehicles\u2014made it possible to reconstruct the morphological features shaped during the LGM at depths between 125 and 135 m. In particular, tectonic controlled palaeo-cliffs affected by landslides, the mouth of a deep palaeo-valley fossilized by marine sediments and a palaeo-lagoon containing a peri-littoral thanatocenosis (18,983 \ub1 268 cal BP) were detected. The Younger Dryas palaeo-shorelines were reconstructed, highlighted by a very well preserved beachrock. The coastal paleo-landscape with lagoon-barrier systems and retro-littoral dunes frequented by the Mesolithic populations was reconstructed