1,102 research outputs found
Queer Neo-Mexicanism: Negotiating Mexican and Gay Identities in the Art of Nahum B. Zenil and Julio Galán
The Mexican artists Nahum B. Zenil and Julio Galán have become the poster children for being gay and Mexican in contemporary art criticism. Critics have drawn comparisons between Zenil and Galán because of their thematic treatment of gay sexuality and Mexican nationalism. These comparisons, however, have often assumed that Zenil and Galán are representing a monolithic gay sexuality that is unaffected by their social class, their relationships to nationalism and Catholicism, and their views on the role of art in social activism. This paper aims to analyze specifically how Zenil and Galán represent two distinct gay identities, all the while employing the similar themes of suffering, the vulnerability of the gay male body, and the use of nationalist and Catholic symbols. Through a close reading of visual texts and the methodological lens of queer theory and art history, the paper will show that both artists represent homosexuality as a social construction that is influenced by the other identity categories the artists inhabit
YouTube or You Lose: Grand Challenges Canada Explores Whether Scientists Are Ready for Web-Based Grant Competitions
It is not hard to trace the influence of technology on the way we read the literature or give scientific presentations. Not so long ago, chemists used hard copies of Chemical Abstracts to find papers and sticks of chalk to deliver talks. Only over the past decade have computer presentations become the norm. In contrast, the way that grants are evaluated has remained relatively unchanged: scientists submit written proposals that are then evaluated by committees of scientists in the field. Might this process soon change as well? The not-for-profit organization Grand Challenges Canada (GCC) recently sponsored a competition in which researchers presented audacious ideas to attack problems related to global
health (Figure 1). In its search for bold ideas from scientists, the GCC organization tested a bold idea as well: each proposal had to be accompanied by a 2-min-long video for public consumption on the Internet. Web users were encouraged not only to view these video summaries but to participate in the evaluation of the proposals by means of clicking on a “thumbs up” button (similar to the “like” buttons found on YouTube and Facebook). The votes from the public video were used by GCC to evaluate each applicant’s ability to “engage the public and increase awareness in
the grand challenges facing global health today”.^1 The competition collected over 180,000 votes and over 100,000 unique online visits from 156 countries in a mere 4 weeks—staggering statistics for scientific videos. While each applicant also submitted a written version of the proposal, which was privately evaluated by “standard” peer-review, the public video feature was one of the first direct implementations of Web 2.0 technology (user-interactive
sites and applications) to evaluate scientific proposals. The competition raises an important question: to what extent, if any, should Web 2.0 technology or other direct evaluation by the public be used to determine the outcome of scientific grant proposals
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Uniform Amplification of Phage with Different Growth Characteristics in Individual Compartments Consisting of Monodisperse Droplets
Jeder Klon zählt! Beim Phagen-Display gehen Klone, die das Phagenwachstum hemmende Liganden präsentieren, bei der Vervielfältigung verloren. In monodispersen Emulsionen, die mithilfe eines einfachen Mikrofluidiksystems erzeugt wurden, ist die Konkurrenz zwischen langsam (S) und schnell (R) wachsenden Phagen abgemildert, sodass das R/S-Verhältnis beibehalten bleibt. Die konkurrenzfreie Vervielfältigung von Phagen bewahrt Liganden, die im normalen Phagen-Display abhanden kommen.Chemistry and Chemical Biolog
Heat-enhanced peptide synthesis on Teflon-patterned paper
In this report, we describe the methodology for 96 parallel organic syntheses of peptides on Teflon-patterned paper assisted by heating with an infra-red lamp. SPOT synthesis is an important technology for production of peptide arrays on a paper-based support for rapid identification of peptide ligands, epitope mapping, and identification of bio-conjugation reactions. The major drawback of the SPOT synthesis methodology published to-date is suboptimal reaction conversion due to mass transport limitations in the unmixed reaction spot. The technology developed in this report overcomes these problems by changing the environment of the reaction from static to dynamic (flow-through), and further accelerating the reaction by selective heating of the reaction support in contact with activated amino acids. Patterning paper with Teflon allows for droplets of organic solvents to be confined in a zone on the paper array and flow through the paper at a well-defined rate and provide a convenient, power-free setup for flow-through solid-phase synthesis and efficient assembly of peptide arrays. We employed an infra-red (IR) lamp to locally heat the cellulosic support during the flow-through delivery of the reagents to each zone of the paper-based array. We demonstrate that IR-heating in solid phase peptide synthesis shortened the reaction time necessary for amide bond formation down to 3 minutes; in some couplings of alpha amino acids, conversion rates increased up to fifteen folds. The IR-heating improved the assembly of difficult sequences, such as homo-oligomers of all 20 natural amino acids
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Reconfigurable Self-Assembly of Mesoscale Optical Components at a Liquid-Liquid Interface
Magnetic fields template the self-assembly of 2D mesoscale optical components consisting of magnetically responsive parts at a liquid–liquid interface. These optical components are tiles of reflective diffraction gratings. Their orientations, and the resulting optical effects, are reconfigurable by a change in the magnetic field. Transferring the assembled structure onto solid substrates generates optically functional coatings or films.Chemistry and Chemical Biolog
Platform for High-Throughput Testing of the Effect of Soluble Compounds on 3D Cell Cultures
In vitro 3D culture could provide an important model of tissues in vivo, but assessing the effects of chemical compounds on cells in specific regions of 3D culture requires physical isolation of cells and thus currently relies mostly on delicate and low-throughput methods. This paper describes a technique (“cells-in-gels-in-paper”, CiGiP) that permits rapid assembly of arrays of 3D cell cultures and convenient isolation of cells from specific regions of these cultures. The 3D cultures were generated by stacking sheets of 200-μm-thick paper, each sheet supporting 96 individual “spots” (thin circular slabs) of hydrogels containing cells, separated by hydrophobic material (wax, PDMS) impermeable to aqueous solutions, and hydrophilic and most hydrophobic solutes. A custom-made 96-well holder isolated the cell-containing zones from each other. Each well contained media to which a different compound could be added. After culture and disassembly of the holder, peeling the layers apart “sectioned” the individual 3D cultures into 200-μm-thick sections which were easy to analyze using 2D imaging (e.g., with a commercial gel scanner). This 96-well holder brings new utilities to high-throughput, cell-based screening, by combining the simplicity of CiGiP with the convenience of a microtiter plate. This work demonstrated the potential of this type of assays by examining the cytotoxic effects of phenylarsine oxide (PAO) and cyclophosphamide (CPA) on human breast cancer cells positioned at different separations from culture media in 3D cultures.Chemistry and Chemical Biolog
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Deep Sequencing Analysis of Phage Libraries using Illumina Platform
This paper presents an analysis of phage-displayed libraries of peptides using Illumina. We describe steps for the preparation of short DNA fragments for deep sequencing and MatLab software for the analysis of the results. Screening of peptide libraries displayed on the surface of bacteriophage (phage display) can be used to discover peptides that bind to any target. The key step in this discovery is the analysis of peptide sequences present in the library. This analysis is usually performed by Sanger sequencing, which is labor intensive and limited to examination of a few hundred phage clones. On the other hand, Illumina deep-sequencing technology can characterize over 107 reads in a single run. We applied Illumina sequencing to analyze phage libraries. Using PCR, we isolated the variable regions from M13KE phage vectors from a phage display library. The PCR primers contained (i) sequences flanking the variable region, (ii) barcodes, and (iii) variable 5′-terminal region. We used this approach to examine how diversity of peptides in phage display libraries changes as a result of amplification of libraries in bacteria. Using HiSeq single-end Illumina sequencing of these fragments, we acquired over 2 × 107 reads, 57 base pairs (bp) in length. Each read contained information about the barcode (6 bp), one complimentary region (12 bp) and a variable region (36 bp). We applied this sequencing to a model library of 106 unique clones and observed that amplification enriches ∼150 clones, which dominate ∼20% of the library. Deep sequencing, for the first time, characterized the collapse of diversity in phage libraries. The results suggest that screens based on repeated amplification and small-scale sequencing identify a few binding clones and miss thousands of useful clones. The deep sequencing approach described here could identify under-represented clones in phage screens. It could also be instrumental in developing new screening strategies, which can preserve diversity of phage clones and identify ligands previously lost in phage display screens.Chemistry and Chemical Biolog
Prospective identification of parasitic sequences in phage display screens
Phage display empowered the development of proteins with new function and ligands for clinically relevant targets. In this report, we use next-generation sequencing to analyze phage-displayed libraries and uncover a strong bias induced by amplification preferences of phage in bacteria. This bias favors fast-growing sequences that collectively constitute <0.01% of the available diversity. Specifically, a library of 10[superscript 9] random 7-mer peptides (Ph.D.-7) includes a few thousand sequences that grow quickly (the ‘parasites’), which are the sequences that are typically identified in phage display screens published to date. A similar collapse was observed in other libraries. Using Illumina and Ion Torrent sequencing and multiple biological replicates of amplification of Ph.D.-7 library, we identified a focused population of 770 ‘parasites’. In all, 197 sequences from this population have been identified in literature reports that used Ph.D.-7 library. Many of these enriched sequences have confirmed function (e.g. target binding capacity). The bias in the literature, thus, can be viewed as a selection with two different selection pressures: (i) target-binding selection, and (ii) amplification-induced selection. Enrichment of parasitic sequences could be minimized if amplification bias is removed. Here, we demonstrate that emulsion amplification in libraries of ~10[superscript 6] diverse clones prevents the biased selection of parasitic clones
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Continuously tunable microdroplet-laser in a microfluidic channel
This paper describes the generation and optical characterization of a series of dye-doped droplet-based optical microcavities with continuously decreasing radius in a microfluidic channel. A flow-focusing nozzle generated the droplets (~21 μm in radius) using benzyl alcohol as the disperse phase and water as the continuous phase. As these drops moved down the channel, they dissolved, and their size decreased. The emission characteristics from the drops could be matched to the whispering gallery modes from spherical micro-cavities. The wavelength of emission from the drops changed from 700 to 620 nm as the radius of the drops decreased from 21 μm to 7 μm. This range of tunability in wavelengths was larger than that reported in previous work on droplet-based cavities.Chemistry and Chemical Biolog
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Aqueous Multiphase Systems of Polymers and Surfactants Provide Self-Assembling Step-Gradients in Density
This Communication demonstrates the generation of over 300 phase-separated systems—ranging from two to six phases—from mixtures of aqueous solutions of polymers and surfactants. These aqueous multiphase systems (MuPSs) form self-assembling, thermodynamically stable step-gradients in density using a common solvent, water. The steps in density between phases of a MuPS can be very small (Δρ ≈ 0.001 g/cm3), do not change over time, and can be tuned by the addition of co-solutes. We use two sets of similar objects, glass beads and pellets of different formulations of Nylon, to demonstrate the ability of MuPSs to separate mixtures of objects by differences in density. The stable interfaces between phases facilitate the convenient collection of species after separation. These results suggest that the stable, sharp step-gradients in density provided by MuPSs can enable new classes of fractionations and separations based on density.Chemistry and Chemical BiologyEngineering and Applied Science
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