The Microbial State: Global Thriving and the Body Politic by Stefanie R. Fishel

Review of Stefanie R. Fishel\u27s The Microbial State: Global Thriving and the Body Politic

Excluded homeomorphism types for dual complexes of surfaces

We study an obstruction to prescribing the dual complex of a strict semistable degeneration of an algebraic surface. In particular, we show that if $\Delta$ is a complex homeomorphic to a 2-dimensional manifold with negative Euler characteristic, then $\Delta$ is not the dual complex of any semistable degeneration. In fact, our theorem is somewhat more general and applies to some complexes homotopy equivalent to such a manifold. Our obstruction is provided by the theory of tropical complexes.Comment: 12 page

Pebbling and Branching Programs Solving the Tree Evaluation Problem

We study restricted computation models related to the Tree Evaluation Problem}. The TEP was introduced in earlier work as a simple candidate for the (*very*) long term goal of separating L and LogDCFL. The input to the problem is a rooted, balanced binary tree of height h, whose internal nodes are labeled with binary functions on [k] = {1,...,k} (each given simply as a list of k^2 elements of [k]), and whose leaves are labeled with elements of [k]. Each node obtains a value in [k] equal to its binary function applied to the values of its children, and the output is the value of the root. The first restricted computation model, called Fractional Pebbling, is a generalization of the black/white pebbling game on graphs, and arises in a natural way from the search for good upper bounds on the size of nondeterministic branching programs (BPs) solving the TEP - for any fixed h, if the binary tree of height h has fractional pebbling cost at most p, then there are nondeterministic BPs of size O(k^p) solving the height h TEP. We prove a lower bound on the fractional pebbling cost of d-ary trees that is tight to within an additive constant for each fixed d. The second restricted computation model we study is a semantic restriction on (non)deterministic BPs solving the TEP - Thrifty BPs. Deterministic (resp. nondeterministic) thrifty BPs suffice to implement the best known algorithms for the TEP, based on black (resp. fractional) pebbling. In earlier work, for each fixed h a lower bound on the size of deterministic thrifty BPs was proved that is tight for sufficiently large k. We give an alternative proof that achieves the same bound for all k. We show the same bound still holds in a less-restricted model, and also that gradually weaker lower bounds can be obtained for gradually weaker restrictions on the model.Comment: Written as one of the requirements for my MSc. 29 pages, 6 figure